Variant report

Variant	rs35212550
Chromosome Location	chr15:49310300-49310301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49303661..49305491-chr15:49310217..49312330,2	K562	blood:

Variant related genes	Relation type
ENSG00000138593	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11070677	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11070679	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11635777	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441272	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12442006	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12904439	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12915955	0.86[ASN][1000 genomes]
rs12916364	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2305195	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34825252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4354871	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4480739	0.88[ASN][1000 genomes]
rs4775791	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4775793	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4775797	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7177541	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs725815	0.86[ASN][1000 genomes]
rs8026097	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs935001	0.86[ASN][1000 genomes]
rs935002	0.86[ASN][1000 genomes]
rs935004	0.86[ASN][1000 genomes]
rs9920868	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49282800-49333400	Weak transcription	A549	lung
2	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:49285000-49329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr15:49289800-49317000	Weak transcription	Stomach Mucosa	stomach
6	chr15:49297400-49310800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr15:49298000-49311400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:49298000-49328400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:49298000-49328800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:49298200-49314600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:49298200-49314600	Strong transcription	Adipose Nuclei	Adipose
12	chr15:49298200-49316200	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr15:49298200-49316400	Strong transcription	Placenta	Placenta
14	chr15:49298200-49329800	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr15:49298400-49314000	Strong transcription	HSMM	muscle
16	chr15:49298400-49322000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:49298400-49322000	Strong transcription	Primary B cells from peripheral blood	blood
18	chr15:49298600-49325200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr15:49298600-49329600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:49299800-49312200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:49301400-49329000	Weak transcription	K562	blood
22	chr15:49303000-49312800	Weak transcription	Lung	lung
23	chr15:49303000-49327600	Weak transcription	Right Ventricle	heart
24	chr15:49303200-49312400	Weak transcription	Fetal Intestine Small	intestine
25	chr15:49304200-49313200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr15:49304200-49318800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:49304400-49312600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr15:49304400-49318000	Weak transcription	Brain Germinal Matrix	brain
29	chr15:49305800-49311000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr15:49306600-49311000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:49306600-49311400	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr15:49307600-49310800	Weak transcription	NHDF-Ad	bronchial
33	chr15:49307600-49311200	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr15:49308400-49318200	Weak transcription	Fetal Brain Female	brain
35	chr15:49308400-49320000	Weak transcription	HepG2	liver
36	chr15:49308400-49320200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr15:49308400-49327000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:49308400-49327600	Weak transcription	Dnd41	blood
39	chr15:49308600-49312000	Weak transcription	Brain Substantia Nigra	brain
40	chr15:49308600-49312400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr15:49308600-49312400	Weak transcription	Thymus	Thymus
42	chr15:49308600-49312400	Weak transcription	Spleen	Spleen
43	chr15:49308600-49312600	Weak transcription	Aorta	Aorta
44	chr15:49308600-49312600	Weak transcription	Pancreas	Pancrea
45	chr15:49308600-49313200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:49308600-49313400	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr15:49308600-49318000	Weak transcription	Brain Angular Gyrus	brain
48	chr15:49308600-49319000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:49308600-49320000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr15:49308600-49320600	Weak transcription	Fetal Heart	heart

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