Variant report

Variant	rs4775797
Chromosome Location	chr15:49302682-49302683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11070677	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070679	1.00[CEU][hapmap];0.86[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11070681	0.86[CEU][hapmap]
rs11542124	0.81[AFR][1000 genomes]
rs11635777	0.95[CEU][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12441272	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12442006	0.88[ASW][hapmap];1.00[CEU][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12904439	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12916364	1.00[CEU][hapmap];0.82[JPT][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2305195	0.86[ASW][hapmap];1.00[CEU][hapmap];0.91[JPT][hapmap];0.88[LWK][hapmap];0.87[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34825252	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35212550	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4354871	0.84[EUR][1000 genomes]
rs4390538	0.82[ASW][hapmap];0.84[YRI][hapmap]
rs4775791	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4775793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168694	0.86[ASN][1000 genomes]
rs7177541	0.88[ASW][hapmap];1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8026097	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8029751	0.88[ASW][hapmap];0.80[MEX][hapmap];0.89[YRI][hapmap]
rs8033060	0.88[ASW][hapmap];0.80[MEX][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs9920868	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4775797	CATSPER2P1	cis	cerebellum	SCAN

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49268800-49309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:49282800-49333400	Weak transcription	A549	lung
3	chr15:49283600-49337600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:49285000-49302800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:49285000-49329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:49287200-49308000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:49287600-49308000	Weak transcription	HepG2	liver
8	chr15:49289200-49336400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:49289400-49303800	Weak transcription	Psoas Muscle	Psoas
10	chr15:49289800-49317000	Weak transcription	Stomach Mucosa	stomach
11	chr15:49291400-49307400	Weak transcription	Gastric	stomach
12	chr15:49291400-49307400	Weak transcription	Pancreas	Pancrea
13	chr15:49291400-49308000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:49292200-49307800	Weak transcription	NHEK	skin
15	chr15:49292800-49308000	Weak transcription	Fetal Heart	heart
16	chr15:49292800-49308000	Weak transcription	Small Intestine	intestine
17	chr15:49297000-49309800	Strong transcription	Duodenum Mucosa	Duodenum
18	chr15:49297200-49305000	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr15:49297200-49305200	Strong transcription	Fetal Brain Female	brain
20	chr15:49297200-49305400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:49297200-49306000	Strong transcription	Fetal Intestine Large	intestine
22	chr15:49297200-49310000	Strong transcription	Liver	Liver
23	chr15:49297400-49305400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:49297400-49310200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:49297400-49310800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr15:49297600-49309400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:49297800-49309800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:49298000-49304600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:49298000-49305200	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr15:49298000-49305400	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr15:49298000-49305600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
32	chr15:49298000-49308000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:49298000-49309800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:49298000-49311400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:49298000-49328400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:49298000-49328800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:49298200-49303200	Strong transcription	Ovary	ovary
38	chr15:49298200-49304800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr15:49298200-49304800	Strong transcription	Stomach Smooth Muscle	stomach
40	chr15:49298200-49305200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr15:49298200-49305200	Strong transcription	Skeletal Muscle Male	skeletal muscle
42	chr15:49298200-49306800	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr15:49298200-49308800	Strong transcription	Fetal Thymus	thymus
44	chr15:49298200-49309600	Strong transcription	Primary T cells from cord blood	blood
45	chr15:49298200-49309600	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr15:49298200-49309600	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr15:49298200-49309800	Strong transcription	Fetal Lung	lung
48	chr15:49298200-49309800	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr15:49298200-49310000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr15:49298200-49310200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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