Variant report

Variant	rs11071366
Chromosome Location	chr15:58334244-58334245
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:58326537-58337408	K562	blood:	n/a	n/a
2	FOS	chr15:58334220-58334527	MCF10A-Er-Src	breast:	n/a	n/a
3	STAT3	chr15:58334144-58334530	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr15:58334183-58334537	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr15:58334180-58334588	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr15:58334231-58334511	MCF10A-Er-Src	breast:	n/a	n/a
7	E2F4	chr15:58334227-58334615	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58334091..58335713-chr15:58356061..58358629,2	K562	blood:

Variant related genes	Relation type
ALDH1A2	TF binding region
ENSG00000259285	Chromatin interaction
ENSG00000128918	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10851633	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11071365	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11630835	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11852540	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11855259	0.81[AFR][1000 genomes]
rs11857461	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12148093	0.98[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12148907	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12901462	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12903474	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12903551	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12908953	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12910752	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12911071	0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12914590	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12915693	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12915901	0.96[ASN][1000 genomes]
rs1372368	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs34871384	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs35246600	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35511675	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4238326	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4369598	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4646563	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4646568	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4646571	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4646572	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4646576	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4646586	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4646593	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4646611	0.88[ASN][1000 genomes]
rs4646612	0.88[ASN][1000 genomes]
rs4646619	0.81[AFR][1000 genomes]
rs4646627	0.83[AFR][1000 genomes]
rs4646629	0.83[AFR][1000 genomes]
rs7164408	0.81[ASN][1000 genomes]
rs8031133	0.82[ASN][1000 genomes]
rs8032107	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9325	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904261	chr15:58258424-58347260	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58331000-58335000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:58331400-58335000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr15:58331600-58336000	Genic enhancers	K562	blood
4	chr15:58331800-58335800	Weak transcription	Fetal Stomach	stomach
5	chr15:58332200-58338200	Weak transcription	Fetal Intestine Large	intestine
6	chr15:58332800-58335000	Weak transcription	Fetal Kidney	kidney
7	chr15:58333200-58335600	Weak transcription	HMEC	breast
8	chr15:58333400-58334800	Weak transcription	Fetal Lung	lung
9	chr15:58333400-58336400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr15:58333600-58335200	Weak transcription	Small Intestine	intestine
11	chr15:58333800-58334400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:58333800-58338200	Weak transcription	Fetal Intestine Small	intestine
13	chr15:58334000-58335000	Enhancers	HUVEC	blood vessel
14	chr15:58334200-58334400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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