Variant report

Variant	rs4646563
Chromosome Location	chr15:58353335-58353336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:58352768-58353805	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58351815..58354737-chr15:58471635..58473722,2	K562	blood:

Variant related genes	Relation type
ENSG00000259285	TF binding region

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10851630	0.87[EUR][1000 genomes]
rs10851631	0.87[EUR][1000 genomes]
rs10851633	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11071356	0.88[EUR][1000 genomes]
rs11071365	0.92[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11071366	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11630835	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11852540	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11855259	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11857461	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12148093	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12148907	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12901462	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12903474	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12903551	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12903792	0.83[EUR][1000 genomes]
rs12907038	0.82[EUR][1000 genomes]
rs12908953	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12910113	0.84[EUR][1000 genomes]
rs12910752	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12911071	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12914590	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12915693	0.93[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12915901	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1372368	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17820823	0.82[EUR][1000 genomes]
rs3204689	0.84[EUR][1000 genomes]
rs34871384	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35246600	0.95[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs35511675	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3784260	0.84[EUR][1000 genomes]
rs3784262	0.87[EUR][1000 genomes]
rs3784263	0.84[EUR][1000 genomes]
rs4369598	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4646568	0.96[ASN][1000 genomes]
rs4646571	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4646572	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4646576	0.95[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4646586	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4646593	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4646611	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4646612	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4646616	0.83[EUR][1000 genomes]
rs4646619	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4646620	0.84[EUR][1000 genomes]
rs4646622	0.88[EUR][1000 genomes]
rs4646627	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4646628	0.86[EUR][1000 genomes]
rs4646629	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4646636	0.83[EUR][1000 genomes]
rs4646638	0.83[EUR][1000 genomes]
rs4646640	0.84[EUR][1000 genomes]
rs7164408	0.87[EUR][1000 genomes]
rs7165247	0.86[EUR][1000 genomes]
rs7170896	0.86[EUR][1000 genomes]
rs7178497	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7495968	0.85[EUR][1000 genomes]
rs8031133	0.83[AFR][1000 genomes]
rs8032107	0.80[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs8033270	0.82[EUR][1000 genomes]
rs9325	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv904262	chr15:58340072-58355798	Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv904263	chr15:58340072-58437346	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv569595	chr15:58343146-58353335	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58353000-58353400	Flanking Active TSS	Fetal Kidney	kidney
2	chr15:58353200-58353400	Flanking Active TSS	K562	blood

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