Variant report

Variant	rs17820823
Chromosome Location	chr15:58239358-58239359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58237530..58240122-chr15:58243780..58246067,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10851630	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10851631	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11071356	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11630835	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11852540	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11855259	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12148093	0.84[EUR][1000 genomes]
rs12148907	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12901462	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12903474	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12903551	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12903792	0.87[EUR][1000 genomes]
rs12907038	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12908953	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12910113	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12910752	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12911071	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12915901	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1372368	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1530293	0.81[EUR][1000 genomes]
rs1550574	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28379349	0.84[AMR][1000 genomes]
rs3204689	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34871384	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35511675	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3784260	0.89[EUR][1000 genomes]
rs3784262	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3784263	0.88[EUR][1000 genomes]
rs4369598	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4646563	0.82[EUR][1000 genomes]
rs4646586	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4646593	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4646611	0.92[EUR][1000 genomes]
rs4646612	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646616	0.87[EUR][1000 genomes]
rs4646619	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646620	0.88[EUR][1000 genomes]
rs4646622	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646627	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646628	0.90[EUR][1000 genomes]
rs4646629	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646636	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4646638	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4646640	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4775005	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7164408	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7165247	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7170896	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7178497	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7495968	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8033270	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9325	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58234200-58242200	Weak transcription	Right Atrium	heart
2	chr15:58235600-58240200	Enhancers	Fetal Lung	lung
3	chr15:58236000-58242200	Weak transcription	Fetal Kidney	kidney
4	chr15:58236400-58241000	Weak transcription	Fetal Muscle Leg	muscle
5	chr15:58238400-58239600	Enhancers	Ovary	ovary
6	chr15:58239200-58239400	Enhancers	Left Ventricle	heart

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