Variant report

Variant	rs1530293
Chromosome Location	chr15:58210398-58210399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58205864..58207434-chr15:58208455..58211266,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10851630	0.81[CEU][hapmap];0.83[MEX][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10851631	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11071356	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11630835	0.82[EUR][1000 genomes]
rs12901462	0.83[MEX][hapmap]
rs12903474	0.81[CEU][hapmap];0.83[MEX][hapmap];0.80[EUR][1000 genomes]
rs12903551	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs12903792	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12907038	0.83[CEU][hapmap];0.82[AMR][1000 genomes]
rs12908953	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs12910113	0.81[CEU][hapmap]
rs12915901	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1550574	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17820823	0.81[EUR][1000 genomes]
rs28379349	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35511675	0.83[EUR][1000 genomes]
rs3784260	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3784262	0.81[CEU][hapmap];0.83[MEX][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3784263	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4238326	0.82[GIH][hapmap]
rs4646611	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4646612	0.82[EUR][1000 genomes]
rs4646616	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4646619	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4646620	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4646622	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4646627	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4646628	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4646629	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4646636	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4646638	0.81[CEU][hapmap];0.83[MEX][hapmap]
rs4646640	0.83[MEX][hapmap]
rs4775005	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7164408	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7165247	0.81[CEU][hapmap];0.83[MEX][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7170896	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7178497	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7495968	0.81[CEU][hapmap];0.83[AMR][1000 genomes]
rs8033270	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9325	0.83[MEX][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58207200-58214600	Weak transcription	Fetal Kidney	kidney
2	chr15:58207400-58214600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:58207600-58211800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:58207600-58215000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:58208400-58211000	Enhancers	Pancreas	Pancrea
6	chr15:58208600-58212000	Weak transcription	Spleen	Spleen
7	chr15:58208800-58213200	Weak transcription	Right Ventricle	heart
8	chr15:58209200-58214800	Weak transcription	Lung	lung
9	chr15:58209200-58215000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr15:58209400-58212200	Weak transcription	Left Ventricle	heart
11	chr15:58209400-58213200	Weak transcription	HSMMtube	muscle
12	chr15:58209400-58213800	Weak transcription	Right Atrium	heart
13	chr15:58209400-58214600	Weak transcription	Fetal Lung	lung
14	chr15:58210200-58210400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:58210200-58212400	Weak transcription	Fetal Heart	heart
16	chr15:58210200-58213200	Weak transcription	Ovary	ovary

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