Variant report

Variant	rs1550574
Chromosome Location	chr15:58213368-58213369
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58211017..58213886-chr15:58215775..58217825,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10851630	0.81[CEU][hapmap];0.89[MEX][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10851631	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11071356	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11630835	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11855259	0.83[AMR][1000 genomes]
rs12901462	0.89[MEX][hapmap]
rs12903474	0.81[CEU][hapmap];0.89[MEX][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12903551	0.86[CEU][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12903792	0.82[EUR][1000 genomes]
rs12907038	0.83[CEU][hapmap]
rs12908953	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12910113	0.81[CEU][hapmap];0.83[AMR][1000 genomes]
rs12915901	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1530293	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17820823	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28379349	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3204689	0.81[AMR][1000 genomes]
rs34871384	0.81[AMR][1000 genomes]
rs35511675	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3784260	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3784262	0.81[CEU][hapmap];0.89[MEX][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3784263	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4080	0.81[EUR][1000 genomes]
rs4646611	0.82[EUR][1000 genomes]
rs4646612	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4646616	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs4646619	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4646620	0.83[EUR][1000 genomes]
rs4646622	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4646627	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4646628	0.85[EUR][1000 genomes]
rs4646629	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4646636	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs4646638	0.81[CEU][hapmap];0.89[MEX][hapmap];0.83[AMR][1000 genomes]
rs4646640	0.89[MEX][hapmap];0.81[AMR][1000 genomes]
rs4775005	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7164408	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7165247	0.81[CEU][hapmap];0.89[MEX][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7170896	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7178497	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7495968	0.81[CEU][hapmap]
rs8033270	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9325	0.89[MEX][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58207200-58214600	Weak transcription	Fetal Kidney	kidney
2	chr15:58207400-58214600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:58207600-58215000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:58209200-58214800	Weak transcription	Lung	lung
5	chr15:58209200-58215000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr15:58209400-58213800	Weak transcription	Right Atrium	heart
7	chr15:58209400-58214600	Weak transcription	Fetal Lung	lung
8	chr15:58211000-58214400	Weak transcription	Pancreas	Pancrea
9	chr15:58211200-58214200	Weak transcription	Liver	Liver
10	chr15:58211800-58213400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:58211800-58213600	Enhancers	Stomach Mucosa	stomach
12	chr15:58211800-58217200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr15:58212000-58213400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:58212200-58213400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:58212200-58216400	Enhancers	Left Ventricle	heart
16	chr15:58212400-58213400	Enhancers	Fetal Heart	heart
17	chr15:58212400-58217400	Enhancers	Fetal Muscle Leg	muscle
18	chr15:58212600-58215200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr15:58212600-58217000	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr15:58212800-58213800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr15:58212800-58214400	Weak transcription	Spleen	Spleen
22	chr15:58212800-58216000	Weak transcription	Esophagus	oesophagus
23	chr15:58213000-58215400	Enhancers	HUVEC	blood vessel
24	chr15:58213200-58213400	Enhancers	Colon Smooth Muscle	Colon
25	chr15:58213200-58213400	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr15:58213200-58213400	Enhancers	Gastric	stomach
27	chr15:58213200-58213400	Enhancers	Psoas Muscle	Psoas
28	chr15:58213200-58214000	Enhancers	HSMM	muscle
29	chr15:58213200-58214000	Enhancers	HSMMtube	muscle
30	chr15:58213200-58215400	Enhancers	Right Ventricle	heart
31	chr15:58213200-58216600	Enhancers	Ovary	ovary
32	chr15:58213200-58217200	Enhancers	Adipose Nuclei	Adipose

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