Variant report

Variant	rs28379349
Chromosome Location	chr15:58202494-58202495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10851630	0.84[AMR][1000 genomes]
rs11071356	0.83[AMR][1000 genomes]
rs11855259	0.87[AMR][1000 genomes]
rs12910113	0.87[AMR][1000 genomes]
rs1530293	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1550574	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17820823	0.84[AMR][1000 genomes]
rs3204689	0.85[AMR][1000 genomes]
rs3784262	0.83[AMR][1000 genomes]
rs4080	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4646619	0.80[AMR][1000 genomes]
rs4646622	0.82[AMR][1000 genomes]
rs4646627	0.80[AMR][1000 genomes]
rs4646629	0.80[AMR][1000 genomes]
rs4646636	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4646638	0.87[AMR][1000 genomes]
rs4646640	0.85[AMR][1000 genomes]
rs4775005	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7164408	0.82[AMR][1000 genomes]
rs7165247	0.83[AMR][1000 genomes]
rs7170896	0.80[AMR][1000 genomes]
rs7178497	0.84[AMR][1000 genomes]
rs7495968	0.81[AMR][1000 genomes]
rs8033270	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9325	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58198800-58203400	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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