Variant report

Variant	rs4646571
Chromosome Location	chr15:58343137-58343138
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58336832..58338668-chr15:58341480..58343380,2	K562	blood:
2	chr15:58339367..58342167-chr15:58342533..58344499,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10851633	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11071365	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11071366	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11630835	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11852540	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11857461	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12148093	0.91[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12148907	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12901462	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12903474	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12903551	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12908953	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12910752	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12911071	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12914590	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12915693	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12915901	0.95[ASN][1000 genomes]
rs1372368	0.93[ASN][1000 genomes]
rs34871384	0.95[ASN][1000 genomes]
rs35246600	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35511675	0.86[ASN][1000 genomes]
rs4238326	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4369598	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4646563	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4646568	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4646572	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4646576	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4646586	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4646593	0.91[ASN][1000 genomes]
rs4646611	0.87[ASN][1000 genomes]
rs4646612	0.87[ASN][1000 genomes]
rs7178497	0.81[AFR][1000 genomes]
rs8031133	0.81[ASN][1000 genomes]
rs8032107	0.80[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv904261	chr15:58258424-58347260	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv569594	chr15:58336218-58347260	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv904262	chr15:58340072-58355798	Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv904263	chr15:58340072-58437346	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58339800-58343800	Weak transcription	Fetal Kidney	kidney
2	chr15:58341800-58343200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr15:58342000-58344600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr15:58342400-58344400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr15:58342400-58344600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
6	chr15:58342600-58344600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr15:58342800-58344600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:58343000-58343200	Genic enhancers	K562	blood
9	chr15:58343000-58344000	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links