Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10851658	0.89[CEU][hapmap]
rs11071447	0.95[CEU][hapmap]
rs11071448	0.92[CEU][hapmap]
rs12439455	0.84[EUR][1000 genomes]
rs3803444	0.92[CEU][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs4592597	0.92[CEU][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs4774331	0.92[CEU][hapmap]
rs4774333	0.92[CEU][hapmap]
rs4774334	0.92[CEU][hapmap]
rs4775168	0.92[CEU][hapmap]
rs4775170	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4775171	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4775173	0.92[CEU][hapmap]
rs6494115	0.92[CEU][hapmap]
rs7175465	0.92[CEU][hapmap]
rs7181716	0.88[CEU][hapmap]
rs7359171	0.92[CEU][hapmap]
rs8024853	0.84[EUR][1000 genomes]
rs8024880	0.92[CEU][hapmap]
rs8025175	0.84[EUR][1000 genomes]
rs8025450	0.84[EUR][1000 genomes]
rs8025871	0.91[CEU][hapmap]
rs8026087	0.92[CEU][hapmap]
rs8028180	0.92[CEU][hapmap]
rs8028913	0.92[CEU][hapmap]
rs8029746	0.91[CEU][hapmap]
rs8030114	0.92[CEU][hapmap]
rs8034709	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv904278	chr15:59705005-59784648	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59736800-59785000	Weak transcription	Fetal Brain Male	brain
2	chr15:59749800-59771800	Weak transcription	Left Ventricle	heart
3	chr15:59755800-59774800	Weak transcription	A549	lung
4	chr15:59760400-59773800	Weak transcription	GM12878-XiMat	blood
5	chr15:59760800-59778800	Weak transcription	Fetal Brain Female	brain
6	chr15:59761200-59766200	Weak transcription	Primary B cells from cord blood	blood
7	chr15:59761800-59765400	Weak transcription	Rectal Mucosa Donor 31	rectum

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