Variant report

Variant	rs8025450
Chromosome Location	chr15:59736919-59736920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr15:59736679-59736922	Hela-S3	cervix:	n/a	n/a
2	REST	chr15:59736602-59736998	PFSK-1	brain:	n/a	n/a
3	REST	chr15:59736675-59737017	PFSK-1	brain:	n/a	n/a
4	REST	chr15:59736580-59737129	HL-60	blood:	n/a	n/a
5	REST	chr15:59736724-59736968	SK-N-SH	brain:	n/a	n/a
6	REST	chr15:59736582-59737077	ECC-1	luminal epithelium:	n/a	n/a
7	REST	chr15:59736693-59736933	PANC-1	pancreas:	n/a	n/a
8	REST	chr15:59736611-59736974	GM12878	blood:	n/a	n/a
9	REST	chr15:59736671-59736974	PANC-1	pancreas:	n/a	n/a
10	REST	chr15:59736539-59737125	ECC-1	luminal epithelium:	n/a	n/a
11	REST	chr15:59736698-59736946	HL-60	blood:	n/a	n/a
12	REST	chr15:59736622-59736965	H1-hESC	embryonic stem cell:	n/a	n/a
13	REST	chr15:59736632-59737018	Hela-S3	cervix:	n/a	n/a
14	REST	chr15:59736624-59737026	H1-hESC	embryonic stem cell:	n/a	n/a
15	REST	chr15:59736671-59736957	K562	blood:	n/a	n/a
16	REST	chr15:59736756-59736987	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
FAM81A	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11071450	0.84[EUR][1000 genomes]
rs12439455	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3803444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4592597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775170	0.84[EUR][1000 genomes]
rs4775171	0.84[EUR][1000 genomes]
rs7181716	0.83[EUR][1000 genomes]
rs8024853	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8025175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8034709	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv904276	chr15:59648633-59743010	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	n/a
3	nsv904278	chr15:59705005-59784648	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59730800-59754800	Weak transcription	Aorta	Aorta
2	chr15:59731000-59737200	Weak transcription	Ovary	ovary
3	chr15:59731000-59739800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:59731200-59737400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr15:59731200-59740000	Weak transcription	Stomach Mucosa	stomach
6	chr15:59731400-59737200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:59731400-59737400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:59731400-59752200	Weak transcription	A549	lung
9	chr15:59731600-59753600	Weak transcription	Fetal Brain Female	brain
10	chr15:59731800-59753400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:59732000-59742000	Weak transcription	Fetal Heart	heart
12	chr15:59732200-59744600	Weak transcription	Hela-S3	cervix
13	chr15:59734000-59738600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr15:59734000-59739400	Weak transcription	Spleen	Spleen
15	chr15:59734200-59737400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:59735400-59753800	Weak transcription	Primary B cells from cord blood	blood
17	chr15:59735800-59737600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:59735800-59738800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr15:59736000-59737000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:59736400-59737400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:59736400-59737400	Weak transcription	Fetal Kidney	kidney
22	chr15:59736400-59738600	Weak transcription	GM12878-XiMat	blood
23	chr15:59736400-59753400	Weak transcription	Brain Angular Gyrus	brain
24	chr15:59736600-59738200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:59736600-59738800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr15:59736800-59738800	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr15:59736800-59785000	Weak transcription	Fetal Brain Male	brain

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