Variant report

Variant	rs12439455
Chromosome Location	chr15:59735183-59735184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11071450	0.84[EUR][1000 genomes]
rs3803444	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4592597	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4775170	0.84[EUR][1000 genomes]
rs4775171	0.84[EUR][1000 genomes]
rs7181716	0.83[EUR][1000 genomes]
rs8024853	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8025175	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8025450	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8034709	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv904276	chr15:59648633-59743010	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	n/a
3	nsv904278	chr15:59705005-59784648	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59730800-59754800	Weak transcription	Aorta	Aorta
2	chr15:59731000-59737200	Weak transcription	Ovary	ovary
3	chr15:59731000-59739800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:59731200-59735600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr15:59731200-59737400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:59731200-59740000	Weak transcription	Stomach Mucosa	stomach
7	chr15:59731400-59737200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:59731400-59737400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:59731400-59752200	Weak transcription	A549	lung
10	chr15:59731600-59735800	Weak transcription	Fetal Kidney	kidney
11	chr15:59731600-59753600	Weak transcription	Fetal Brain Female	brain
12	chr15:59731800-59736000	Weak transcription	Brain Angular Gyrus	brain
13	chr15:59731800-59753400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr15:59732000-59736200	Weak transcription	Fetal Brain Male	brain
15	chr15:59732000-59742000	Weak transcription	Fetal Heart	heart
16	chr15:59732200-59744600	Weak transcription	Hela-S3	cervix
17	chr15:59733400-59735800	Enhancers	Primary B cells from peripheral blood	blood
18	chr15:59734000-59738600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr15:59734000-59739400	Weak transcription	Spleen	Spleen
20	chr15:59734200-59735600	Weak transcription	Brain Anterior Caudate	brain
21	chr15:59734200-59737400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:59734400-59735800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:59734800-59735200	Weak transcription	Primary B cells from cord blood	blood
24	chr15:59734800-59735600	Enhancers	GM12878-XiMat	blood

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