Variant report

Variant	rs11071561
Chromosome Location	chr15:61131683-61131684
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12910376	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs341398	0.82[CHB][hapmap];0.84[CHD][hapmap]
rs341401	0.80[CHB][hapmap]
rs3959689	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4775301	0.90[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap]
rs8023252	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs8024133	0.89[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049839	chr15:61095001-61275125	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11071561	FAM81A	cis	cerebellum	SCAN

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:61115800-61133600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr15:61123200-61142000	Weak transcription	Fetal Stomach	stomach
3	chr15:61123600-61145200	Weak transcription	Right Ventricle	heart
4	chr15:61126800-61141600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:61127000-61131800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:61127000-61132400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:61127400-61132400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr15:61127400-61134800	Weak transcription	Psoas Muscle	Psoas
9	chr15:61127600-61132400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr15:61129000-61132400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:61129200-61132200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:61129200-61134200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr15:61129200-61143400	Weak transcription	Ovary	ovary
14	chr15:61130000-61132200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr15:61130200-61132600	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr15:61130200-61132800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:61130600-61131800	Weak transcription	Fetal Muscle Leg	muscle
18	chr15:61130800-61131800	Weak transcription	Esophagus	oesophagus
19	chr15:61130800-61132200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:61130800-61134000	Weak transcription	GM12878-XiMat	blood
21	chr15:61130800-61147200	Weak transcription	Left Ventricle	heart
22	chr15:61131000-61131800	Weak transcription	Fetal Thymus	thymus
23	chr15:61131600-61131800	Enhancers	Primary T cells from cord blood	blood
24	chr15:61131600-61131800	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr15:61131600-61131800	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr15:61131600-61131800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:61131600-61132000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
28	chr15:61131600-61132600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr15:61131600-61132800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr15:61131600-61134200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
31	chr15:61131600-61134600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
32	chr15:61131600-61135400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood

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