Variant report

Variant	rs11071642
Chromosome Location	chr15:62229356-62229357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:62213296..62215607-chr15:62227904..62230544,2	K562	blood:

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10519157	0.84[ASN][1000 genomes]
rs11632425	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11634163	0.90[ASN][1000 genomes]
rs11635980	0.81[ASN][1000 genomes]
rs11638951	0.86[CHB][hapmap]
rs11639482	0.82[CEU][hapmap]
rs12437684	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12439356	0.81[CEU][hapmap]
rs12440524	0.81[ASN][1000 genomes]
rs12442212	0.81[CEU][hapmap]
rs12442675	0.85[CEU][hapmap]
rs12592402	0.85[CEU][hapmap]
rs12594658	0.86[CEU][hapmap]
rs12898423	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12906423	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12908081	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs12908472	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12911564	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12912348	1.00[YRI][hapmap]
rs12915295	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12915825	0.88[EUR][1000 genomes]
rs12916268	0.88[EUR][1000 genomes]
rs13379492	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13379947	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs1344601	0.82[CEU][hapmap]
rs1425270	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17205365	1.00[YRI][hapmap]
rs17238266	0.86[CHB][hapmap]
rs17271193	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17271305	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs17271340	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs1981916	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs1981917	0.88[EUR][1000 genomes]
rs2162062	0.82[CEU][hapmap]
rs2414753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2414755	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs28411984	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28513564	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34965045	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35967150	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3743297	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs3784633	0.84[CEU][hapmap]
rs3784634	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4283171	0.88[EUR][1000 genomes]
rs4286060	0.81[EUR][1000 genomes]
rs4587915	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4774427	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4775453	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs4775455	0.86[CEU][hapmap]
rs5006593	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62008532	0.81[ASN][1000 genomes]
rs7172967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7177173	0.85[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7177276	0.81[CEU][hapmap]
rs7177711	0.85[CEU][hapmap]
rs7178424	0.81[CEU][hapmap]
rs7178540	0.81[CEU][hapmap]
rs7179506	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs731820	0.81[CEU][hapmap]
rs8025877	0.85[CEU][hapmap]
rs8026008	0.81[CEU][hapmap]
rs8027751	0.88[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8032433	0.81[CEU][hapmap]
rs8032681	0.89[EUR][1000 genomes]
rs8034216	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8034335	0.96[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8034914	0.84[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8039105	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs8039651	0.85[CEU][hapmap]
rs893156	0.82[CEU][hapmap]
rs893158	0.82[CEU][hapmap]
rs933807	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904284	chr15:62123600-62243197	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv521334	chr15:62129809-62340126	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv527451	chr15:62129809-62340126	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904285	chr15:62146598-62246864	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv904286	chr15:62146598-62313373	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv904287	chr15:62146598-62338797	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv904288	chr15:62146598-62356386	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv569641	chr15:62155282-62287456	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv904289	chr15:62156690-62287456	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv516639	chr15:62175134-62340126	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv904290	chr15:62175134-62356386	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv569642	chr15:62178695-62243197	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv904291	chr15:62178695-62287456	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv904292	chr15:62178695-62313373	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv904293	chr15:62178695-62338797	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv904294	chr15:62178695-62356386	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
17	nsv457176	chr15:62178695-62519658	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
18	nsv569643	chr15:62178695-62519658	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
19	nsv904295	chr15:62198564-62259637	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv904296	chr15:62198564-62313373	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv471247	chr15:62202481-62519658	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
22	nsv569644	chr15:62202482-62247067	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv904297	chr15:62202482-62313373	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
24	nsv569645	chr15:62202482-62319307	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
25	nsv569646	chr15:62202482-62519658	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
26	esv1816724	chr15:62205104-62285146	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
27	nsv569647	chr15:62214607-62284101	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
28	nsv904298	chr15:62218689-62338797	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:62142400-62253000	Weak transcription	Spleen	Spleen
2	chr15:62143800-62235600	Weak transcription	Fetal Brain Male	brain
3	chr15:62146800-62230000	Weak transcription	Pancreas	Pancrea
4	chr15:62150000-62276200	Weak transcription	Psoas Muscle	Psoas
5	chr15:62184600-62236800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:62185600-62262200	Weak transcription	Gastric	stomach
7	chr15:62185600-62333600	Weak transcription	Right Ventricle	heart
8	chr15:62185800-62300000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:62187200-62246000	Weak transcription	A549	lung
10	chr15:62188600-62309400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:62194600-62235400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:62194600-62266800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr15:62195400-62234200	Strong transcription	Primary B cells from peripheral blood	blood
14	chr15:62195400-62235800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:62195600-62285400	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr15:62197000-62236200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:62205000-62236600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr15:62206600-62242600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:62207800-62263200	Weak transcription	Fetal Brain Female	brain
20	chr15:62208200-62263200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr15:62208200-62290200	Weak transcription	Aorta	Aorta
22	chr15:62208400-62253200	Weak transcription	Thymus	Thymus
23	chr15:62208600-62236800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:62209800-62236200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr15:62209800-62236600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:62209800-62236600	Weak transcription	Lung	lung
27	chr15:62209800-62236600	Weak transcription	Ovary	ovary
28	chr15:62209800-62250600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr15:62209800-62252400	Weak transcription	Brain Cingulate Gyrus	brain
30	chr15:62210000-62237000	Weak transcription	Colonic Mucosa	Colon
31	chr15:62210000-62242800	Weak transcription	Brain Substantia Nigra	brain
32	chr15:62213200-62231400	Weak transcription	Hela-S3	cervix
33	chr15:62214400-62239600	Weak transcription	Brain Hippocampus Middle	brain
34	chr15:62214800-62236200	Weak transcription	Brain Angular Gyrus	brain
35	chr15:62214800-62240200	Weak transcription	HMEC	breast
36	chr15:62214800-62250800	Weak transcription	NH-A	brain
37	chr15:62214800-62253600	Weak transcription	HepG2	liver
38	chr15:62214800-62265600	Weak transcription	Fetal Kidney	kidney
39	chr15:62215000-62236600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr15:62219400-62236800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr15:62219600-62253000	Weak transcription	Fetal Intestine Small	intestine
42	chr15:62220600-62238400	Strong transcription	Primary B cells from cord blood	blood
43	chr15:62221200-62236200	Weak transcription	Rectal Smooth Muscle	rectum
44	chr15:62221400-62235800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr15:62221400-62236600	Weak transcription	Osteobl	bone
46	chr15:62221400-62327600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr15:62221600-62239200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr15:62221600-62244400	Weak transcription	Small Intestine	intestine
49	chr15:62221600-62245800	Weak transcription	Fetal Thymus	thymus
50	chr15:62221600-62253000	Weak transcription	Fetal Stomach	stomach

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