Variant report

Variant	rs17271193
Chromosome Location	chr15:62165168-62165169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11071642	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11632425	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11634163	0.87[ASN][1000 genomes]
rs12437684	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12439719	0.86[AFR][1000 genomes]
rs12898423	0.92[ASN][1000 genomes]
rs12906423	0.89[EUR][1000 genomes]
rs12907450	0.90[AFR][1000 genomes]
rs12908081	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12908472	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12911564	0.89[EUR][1000 genomes]
rs12915295	0.91[EUR][1000 genomes]
rs12915825	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12916268	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13379492	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13379947	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1425270	0.85[EUR][1000 genomes]
rs17271305	0.87[ASN][1000 genomes]
rs17271340	0.81[EUR][1000 genomes]
rs1981916	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1981917	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2414753	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2414755	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28411984	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28513564	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34965045	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35967150	0.89[ASN][1000 genomes]
rs3743297	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3784634	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4283171	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4587915	0.86[EUR][1000 genomes]
rs4774427	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4775453	0.90[EUR][1000 genomes]
rs5006593	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7172967	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7177173	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7179506	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8027751	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8032681	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8034216	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8034335	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8034914	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904284	chr15:62123600-62243197	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv521334	chr15:62129809-62340126	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv527451	chr15:62129809-62340126	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904285	chr15:62146598-62246864	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv904286	chr15:62146598-62313373	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv904287	chr15:62146598-62338797	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv904288	chr15:62146598-62356386	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv569641	chr15:62155282-62287456	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv904289	chr15:62156690-62287456	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:62132400-62171200	Weak transcription	HMEC	breast
2	chr15:62138800-62184200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:62139200-62182200	Weak transcription	Brain Substantia Nigra	brain
4	chr15:62139800-62185200	Weak transcription	NHLF	lung
5	chr15:62140000-62184800	Weak transcription	Right Ventricle	heart
6	chr15:62140200-62180000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr15:62141200-62165400	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:62142000-62209400	Weak transcription	Colonic Mucosa	Colon
9	chr15:62142400-62253000	Weak transcription	Spleen	Spleen
10	chr15:62142600-62209200	Weak transcription	K562	blood
11	chr15:62143800-62182200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:62143800-62235600	Weak transcription	Fetal Brain Male	brain
13	chr15:62144000-62194600	Weak transcription	Fetal Lung	lung
14	chr15:62144800-62184000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:62145200-62182000	Weak transcription	NHEK	skin
16	chr15:62145400-62171600	Weak transcription	Stomach Mucosa	stomach
17	chr15:62145800-62182000	Weak transcription	Small Intestine	intestine
18	chr15:62146800-62230000	Weak transcription	Pancreas	Pancrea
19	chr15:62147000-62181800	Weak transcription	Brain Anterior Caudate	brain
20	chr15:62147000-62184000	Weak transcription	Lung	lung
21	chr15:62147200-62165200	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:62147800-62184000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr15:62149000-62198000	Weak transcription	Fetal Kidney	kidney
24	chr15:62150000-62276200	Weak transcription	Psoas Muscle	Psoas
25	chr15:62150200-62165200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:62150200-62184200	Weak transcription	Aorta	Aorta
27	chr15:62150200-62185400	Weak transcription	Fetal Heart	heart
28	chr15:62150800-62182000	Weak transcription	HSMMtube	muscle
29	chr15:62150800-62183800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr15:62153200-62185400	Strong transcription	Primary monocytes fromperipheralblood	blood
31	chr15:62153800-62185000	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr15:62154200-62198200	Weak transcription	NH-A	brain
33	chr15:62154400-62184200	Weak transcription	Fetal Intestine Small	intestine
34	chr15:62154600-62183800	Weak transcription	Brain Angular Gyrus	brain
35	chr15:62154800-62184200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:62155000-62184600	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr15:62157200-62169000	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr15:62157400-62167000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr15:62158200-62175200	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr15:62158600-62176400	Strong transcription	Primary B cells from peripheral blood	blood
41	chr15:62159000-62170800	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr15:62159200-62174600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr15:62159200-62175200	Strong transcription	Primary B cells from cord blood	blood
44	chr15:62159400-62166600	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr15:62159400-62169000	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr15:62159400-62175000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:62159600-62166400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr15:62160400-62172200	Weak transcription	Brain Germinal Matrix	brain
49	chr15:62160600-62166400	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr15:62160600-62166800	Strong transcription	Duodenum Mucosa	Duodenum

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