Variant report

Variant	rs11072344
Chromosome Location	chr15:72391892-72391893
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs11072341	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11072343	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1120002	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12437582	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12438532	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12439689	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12440204	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12440299	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12441246	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12441470	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12441567	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12441622	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12442680	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12443127	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12592615	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12592806	0.87[AMR][1000 genomes]
rs12592858	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12592932	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12592969	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12593082	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12593857	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12593946	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12594297	0.81[EUR][1000 genomes]
rs1545825	0.87[ASN][1000 genomes]
rs16953770	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16956539	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16956599	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16956602	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1871834	0.84[ASN][1000 genomes]
rs2305705	0.93[ASN][1000 genomes]
rs2306575	0.87[AMR][1000 genomes]
rs28397923	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28639924	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28653163	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28701834	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2929514	0.81[ASN][1000 genomes]
rs2929515	0.81[ASN][1000 genomes]
rs2929521	0.87[ASN][1000 genomes]
rs2929522	0.87[ASN][1000 genomes]
rs2929524	0.82[ASN][1000 genomes]
rs2929530	0.85[ASN][1000 genomes]
rs2929533	0.84[ASN][1000 genomes]
rs2957369	0.87[ASN][1000 genomes]
rs2957729	0.81[ASN][1000 genomes]
rs2957730	0.81[ASN][1000 genomes]
rs2957733	0.81[ASN][1000 genomes]
rs2957741	0.87[ASN][1000 genomes]
rs2957747	0.87[ASN][1000 genomes]
rs2957749	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34625473	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35773391	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3809505	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3825869	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4511484	0.87[ASN][1000 genomes]
rs7164646	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7171446	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7175907	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7178613	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8026894	0.90[EUR][1000 genomes]
rs8029218	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8032957	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8039245	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9920148	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
6	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
8	esv11550	chr15:72353301-72395288	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv869747	chr15:72372245-72403103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
11	nsv510665	chr15:72374862-72407548	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv511557	chr15:72386175-72408069	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv569929	chr15:72386349-72403001	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72351200-72395800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr15:72367200-72407600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr15:72372200-72399400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:72373600-72394400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr15:72375000-72408200	Weak transcription	Primary B cells from cord blood	blood
6	chr15:72375800-72395600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:72377800-72397600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr15:72378800-72393200	Weak transcription	Fetal Intestine Large	intestine
9	chr15:72378800-72395800	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:72379000-72395600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr15:72379000-72407800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:72379200-72393200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr15:72379200-72395600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr15:72379800-72406200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:72380000-72407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:72380200-72395600	Weak transcription	Brain Anterior Caudate	brain
17	chr15:72380200-72395600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr15:72380600-72393200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr15:72380800-72395400	Weak transcription	Psoas Muscle	Psoas
20	chr15:72384800-72392400	Weak transcription	Stomach Mucosa	stomach
21	chr15:72388200-72395600	Weak transcription	Osteobl	bone
22	chr15:72388400-72396200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr15:72389200-72395600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:72389400-72395800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:72389400-72396400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr15:72389600-72395600	Weak transcription	Fetal Lung	lung
27	chr15:72389600-72395600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr15:72389600-72403600	Weak transcription	Fetal Muscle Leg	muscle
29	chr15:72389800-72396200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr15:72390400-72407600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr15:72390800-72395000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:72390800-72395000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:72390800-72395600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr15:72390800-72395600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:72391000-72395600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:72391200-72404200	Weak transcription	HSMMtube	muscle
37	chr15:72391400-72392000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:72391400-72392600	Strong transcription	Fetal Intestine Small	intestine
39	chr15:72391400-72392600	Strong transcription	Fetal Stomach	stomach
40	chr15:72391800-72401600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr15:72391800-72406600	Weak transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links