Variant report

Variant	rs8032957
Chromosome Location	chr15:72340034-72340035
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs11072341	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072343	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11072344	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11072348	1.00[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]
rs1120002	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11856068	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12437582	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12438532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12439689	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12439773	0.82[EUR][1000 genomes]
rs12440204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[ASN][1000 genomes]
rs12440299	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12441246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12441470	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441567	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441622	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442680	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12443127	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12592615	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12592806	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12592858	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12592932	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12592969	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12593082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12593857	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593946	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12903688	1.00[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1457030	1.00[ASW][hapmap];1.00[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap]
rs1471688	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1545825	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1598714	0.91[AFR][1000 genomes]
rs16953747	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16953770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16956539	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[ASN][1000 genomes]
rs16956602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[ASN][1000 genomes]
rs1805020	0.86[EUR][1000 genomes]
rs1805021	0.86[EUR][1000 genomes]
rs1871834	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1905337	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1979459	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2277544	0.82[EUR][1000 genomes]
rs2291279	0.86[EUR][1000 genomes]
rs2305705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2306575	0.86[ASN][1000 genomes]
rs2415124	0.80[AFR][1000 genomes]
rs2415125	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2415129	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2415131	1.00[ASW][hapmap];0.91[MKK][hapmap];0.83[AFR][1000 genomes]
rs2723357	0.82[AFR][1000 genomes]
rs2742321	0.81[AFR][1000 genomes]
rs28397923	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28639924	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28653163	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28658271	0.82[EUR][1000 genomes]
rs28701834	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2899774	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2929514	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2929515	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2929521	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2929522	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2929524	0.90[ASN][1000 genomes]
rs2929530	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2929531	1.00[ASW][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2929533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2957367	0.95[AFR][1000 genomes]
rs2957369	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2957726	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2957729	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2957730	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2957733	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957741	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2957747	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2957748	0.87[ASN][1000 genomes]
rs2957749	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2957751	0.87[AFR][1000 genomes]
rs2957752	0.92[AFR][1000 genomes]
rs34625473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35696756	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35773391	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3809505	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3825869	0.96[ASN][1000 genomes]
rs4238451	1.00[ASW][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs4511484	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4776583	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4777472	0.84[ASN][1000 genomes]
rs4777479	0.85[ASN][1000 genomes]
rs4777487	1.00[YRI][hapmap]
rs4777493	0.90[YRI][hapmap]
rs6494976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6494987	0.89[AFR][1000 genomes]
rs6494988	0.84[AFR][1000 genomes]
rs6494989	0.86[AFR][1000 genomes]
rs6494995	0.85[YRI][hapmap]
rs7162134	0.84[ASN][1000 genomes]
rs7164646	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7165735	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7170173	1.00[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7171097	1.00[YRI][hapmap]
rs7171446	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7172281	0.85[AMR][1000 genomes]
rs7173532	1.00[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7175907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7178613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7180934	1.00[ASW][hapmap];1.00[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs8026894	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs8029218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[ASN][1000 genomes]
rs8031658	0.95[AFR][1000 genomes]
rs8033997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8034436	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8034722	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8039245	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8182066	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8192381	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs930871	1.00[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]
rs981695	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9920148	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
6	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72226800-72343600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr15:72282000-72341800	Weak transcription	Brain Angular Gyrus	brain
3	chr15:72282800-72347000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:72282800-72349800	Weak transcription	Brain Hippocampus Middle	brain
5	chr15:72298400-72344000	Weak transcription	Spleen	Spleen
6	chr15:72300000-72351000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:72300200-72341800	Weak transcription	Brain Substantia Nigra	brain
8	chr15:72301000-72341800	Weak transcription	Brain Anterior Caudate	brain
9	chr15:72301000-72361200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr15:72302200-72349400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:72311600-72341800	Weak transcription	Fetal Kidney	kidney
12	chr15:72326600-72341000	Weak transcription	NHLF	lung
13	chr15:72326600-72341800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr15:72326600-72342200	Weak transcription	Fetal Brain Male	brain
15	chr15:72326600-72343600	Weak transcription	Right Ventricle	heart
16	chr15:72328400-72349800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr15:72330000-72343400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:72330000-72349800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:72330000-72349800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr15:72330200-72341000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr15:72331000-72344200	Weak transcription	GM12878-XiMat	blood
22	chr15:72331200-72343600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:72332200-72342200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr15:72332400-72343600	Weak transcription	Gastric	stomach
25	chr15:72332600-72343400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:72332600-72343800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:72332800-72340200	Weak transcription	Psoas Muscle	Psoas
28	chr15:72332800-72340200	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr15:72332800-72341000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr15:72332800-72341800	Weak transcription	Fetal Heart	heart
31	chr15:72332800-72343400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr15:72332800-72343600	Weak transcription	Fetal Intestine Small	intestine
33	chr15:72333000-72343600	Weak transcription	Brain Germinal Matrix	brain
34	chr15:72333200-72353800	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr15:72334000-72341800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr15:72334000-72355000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr15:72334200-72343600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:72334200-72343600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr15:72334400-72350000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr15:72336400-72340600	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr15:72337000-72341800	Weak transcription	Pancreas	Pancrea
42	chr15:72337000-72349800	Weak transcription	Colon Smooth Muscle	Colon
43	chr15:72338600-72340200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr15:72338600-72343400	Weak transcription	Esophagus	oesophagus
45	chr15:72338800-72340800	Weak transcription	HUVEC	blood vessel
46	chr15:72338800-72341000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr15:72338800-72341000	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr15:72338800-72341000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr15:72338800-72341000	Weak transcription	Dnd41	blood
50	chr15:72338800-72341200	Weak transcription	Fetal Intestine Large	intestine

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