Variant report

Variant	rs2957367
Chromosome Location	chr15:72352986-72352987
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10851849	1.00[EUR][1000 genomes]
rs11072341	0.98[AFR][1000 genomes]
rs11072348	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11072352	1.00[EUR][1000 genomes]
rs12903688	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1457030	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1545825	0.87[AFR][1000 genomes]
rs1598714	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16953747	0.81[AFR][1000 genomes]
rs1905337	0.80[AFR][1000 genomes]
rs2254976	1.00[EUR][1000 genomes]
rs2415124	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2415131	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2625531	1.00[EUR][1000 genomes]
rs2723338	1.00[EUR][1000 genomes]
rs2723357	0.81[AFR][1000 genomes]
rs2742321	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2856926	1.00[EUR][1000 genomes]
rs2912208	1.00[EUR][1000 genomes]
rs2912209	1.00[EUR][1000 genomes]
rs2912211	1.00[EUR][1000 genomes]
rs2912212	1.00[EUR][1000 genomes]
rs2912213	1.00[EUR][1000 genomes]
rs2912232	1.00[EUR][1000 genomes]
rs2925647	1.00[EUR][1000 genomes]
rs2925651	1.00[EUR][1000 genomes]
rs2929515	0.81[AFR][1000 genomes]
rs2929516	1.00[EUR][1000 genomes]
rs2929520	1.00[EUR][1000 genomes]
rs2929521	0.89[AFR][1000 genomes]
rs2929522	0.94[AFR][1000 genomes]
rs2929523	1.00[EUR][1000 genomes]
rs2929530	0.82[AFR][1000 genomes]
rs2929531	0.81[AFR][1000 genomes]
rs2957369	0.94[AFR][1000 genomes]
rs2957370	1.00[EUR][1000 genomes]
rs2957371	1.00[EUR][1000 genomes]
rs2957722	1.00[EUR][1000 genomes]
rs2957729	0.81[AFR][1000 genomes]
rs2957733	0.85[AFR][1000 genomes]
rs2957741	0.82[AFR][1000 genomes]
rs2957747	0.85[AFR][1000 genomes]
rs2957749	0.98[AFR][1000 genomes]
rs2957751	0.92[AFR][1000 genomes]
rs2957752	0.96[AFR][1000 genomes]
rs2959901	1.00[EUR][1000 genomes]
rs2959902	1.00[EUR][1000 genomes]
rs2959907	1.00[EUR][1000 genomes]
rs2959920	1.00[EUR][1000 genomes]
rs2959928	1.00[EUR][1000 genomes]
rs2959934	1.00[EUR][1000 genomes]
rs2959936	1.00[EUR][1000 genomes]
rs2959937	1.00[EUR][1000 genomes]
rs2959942	1.00[EUR][1000 genomes]
rs35293819	1.00[EUR][1000 genomes]
rs35696756	0.81[AFR][1000 genomes]
rs4238451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4461029	1.00[EUR][1000 genomes]
rs4511484	0.87[AFR][1000 genomes]
rs4776587	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4776588	1.00[EUR][1000 genomes]
rs4777487	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4777493	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56168468	1.00[EUR][1000 genomes]
rs6494987	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6494988	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6494989	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6494991	1.00[AMR][1000 genomes]
rs6494995	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7170173	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7171097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7173348	1.00[EUR][1000 genomes]
rs7173532	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7177512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7179691	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7180934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8031658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8032957	0.95[AFR][1000 genomes]
rs8034436	0.80[AFR][1000 genomes]
rs8034892	1.00[EUR][1000 genomes]
rs930871	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs981695	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
6	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72301000-72361200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr15:72333200-72353800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr15:72334000-72355000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:72338800-72353000	Weak transcription	Placenta	Placenta
5	chr15:72339000-72353000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:72339000-72353600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr15:72339000-72363400	Weak transcription	Primary B cells from cord blood	blood
8	chr15:72343800-72353200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:72344000-72355200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:72344400-72353000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:72344400-72353600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:72344800-72353200	Weak transcription	Lung	lung
13	chr15:72345200-72353000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:72345200-72353000	Weak transcription	Esophagus	oesophagus
15	chr15:72345200-72353000	Weak transcription	Fetal Stomach	stomach
16	chr15:72345400-72353200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:72349600-72356400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:72350200-72353000	Weak transcription	Right Ventricle	heart
19	chr15:72350200-72353200	Weak transcription	Stomach Mucosa	stomach
20	chr15:72350200-72355400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:72350400-72353000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:72350400-72353000	Weak transcription	Colon Smooth Muscle	Colon
23	chr15:72350400-72353000	Weak transcription	Fetal Heart	heart
24	chr15:72350400-72353000	Weak transcription	HSMM	muscle
25	chr15:72350400-72353200	Weak transcription	Adipose Nuclei	Adipose
26	chr15:72350400-72353200	Weak transcription	Fetal Kidney	kidney
27	chr15:72350400-72353400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:72350400-72353400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr15:72350400-72353600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:72350400-72354000	Weak transcription	Hela-S3	cervix
31	chr15:72350400-72354800	Weak transcription	Brain Anterior Caudate	brain
32	chr15:72350400-72355600	Weak transcription	HMEC	breast
33	chr15:72350600-72353200	Weak transcription	Primary T cells from cord blood	blood
34	chr15:72350600-72353200	Weak transcription	Fetal Lung	lung
35	chr15:72350600-72353800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr15:72350600-72354200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr15:72350600-72354600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr15:72350800-72353000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr15:72350800-72360000	Weak transcription	A549	lung
40	chr15:72351000-72353000	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr15:72351200-72353200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:72351200-72353200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr15:72351200-72354800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr15:72351200-72355400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr15:72351200-72361000	Weak transcription	Fetal Intestine Large	intestine
46	chr15:72351200-72363400	Weak transcription	NHDF-Ad	bronchial
47	chr15:72351200-72395800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr15:72351400-72353000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr15:72351600-72353000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr15:72351600-72353200	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links