Variant report

Variant	rs930871
Chromosome Location	chr15:72432583-72432584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10851849	1.00[EUR][1000 genomes]
rs11072341	0.81[AFR][1000 genomes]
rs11072348	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11072352	1.00[EUR][1000 genomes]
rs12593333	1.00[EUR][1000 genomes]
rs12903688	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1457030	1.00[ASW][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1545825	0.80[AFR][1000 genomes]
rs1598714	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1800431	1.00[EUR][1000 genomes]
rs1871834	1.00[ASW][hapmap];0.89[LWK][hapmap];0.83[MKK][hapmap];0.90[YRI][hapmap]
rs2415131	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[MKK][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28552371	1.00[CEU][hapmap]
rs2856926	1.00[EUR][1000 genomes]
rs2912208	1.00[EUR][1000 genomes]
rs2912209	1.00[EUR][1000 genomes]
rs2912211	1.00[EUR][1000 genomes]
rs2912212	1.00[EUR][1000 genomes]
rs2912213	1.00[EUR][1000 genomes]
rs2912218	1.00[EUR][1000 genomes]
rs2912232	1.00[EUR][1000 genomes]
rs2925647	1.00[EUR][1000 genomes]
rs2925651	1.00[EUR][1000 genomes]
rs2929516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs2929520	1.00[EUR][1000 genomes]
rs2929523	1.00[EUR][1000 genomes]
rs2929530	1.00[ASW][hapmap];0.97[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]
rs2929531	1.00[ASW][hapmap];0.94[LWK][hapmap];0.94[MKK][hapmap];0.95[YRI][hapmap]
rs2929533	0.88[YRI][hapmap]
rs2957367	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2957370	1.00[EUR][1000 genomes]
rs2957371	1.00[EUR][1000 genomes]
rs2957722	1.00[EUR][1000 genomes]
rs2957749	1.00[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2957751	0.80[AFR][1000 genomes]
rs2957752	0.80[AFR][1000 genomes]
rs2959901	1.00[EUR][1000 genomes]
rs2959902	1.00[EUR][1000 genomes]
rs2959905	1.00[EUR][1000 genomes]
rs2959907	1.00[EUR][1000 genomes]
rs2959920	1.00[EUR][1000 genomes]
rs2959928	1.00[EUR][1000 genomes]
rs2959934	1.00[EUR][1000 genomes]
rs2959936	1.00[EUR][1000 genomes]
rs2959937	1.00[EUR][1000 genomes]
rs2959942	1.00[EUR][1000 genomes]
rs35293819	1.00[EUR][1000 genomes]
rs35514603	1.00[EUR][1000 genomes]
rs4238451	1.00[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4265763	1.00[EUR][1000 genomes]
rs4461029	1.00[EUR][1000 genomes]
rs4776585	0.88[AFR][1000 genomes]
rs4776587	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4776588	1.00[EUR][1000 genomes]
rs4777487	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4777493	0.90[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4777502	1.00[EUR][1000 genomes]
rs56168468	1.00[EUR][1000 genomes]
rs6494987	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6494988	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6494989	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6494991	1.00[AMR][1000 genomes]
rs6494995	0.85[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7170173	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7171097	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7173348	1.00[EUR][1000 genomes]
rs7173532	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7177512	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7179691	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7180934	1.00[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8031658	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8032957	1.00[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap]
rs8034892	1.00[EUR][1000 genomes]
rs8037749	1.00[EUR][1000 genomes]
rs8192347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
4	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
6	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72411600-72433800	Weak transcription	Fetal Intestine Small	intestine
2	chr15:72421800-72433000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr15:72426800-72436200	Weak transcription	Aorta	Aorta
4	chr15:72427400-72433800	Weak transcription	HepG2	liver
5	chr15:72428400-72433800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr15:72428400-72436000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr15:72428400-72440400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:72428400-72447400	Weak transcription	Pancreas	Pancrea
9	chr15:72428800-72433200	Weak transcription	Fetal Kidney	kidney
10	chr15:72428800-72433200	Weak transcription	Fetal Stomach	stomach
11	chr15:72428800-72433800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:72428800-72433800	Weak transcription	Small Intestine	intestine
13	chr15:72428800-72433800	Weak transcription	Stomach Mucosa	stomach
14	chr15:72429200-72433800	Weak transcription	A549	lung
15	chr15:72429800-72433800	Weak transcription	Fetal Lung	lung
16	chr15:72429800-72445800	Weak transcription	Fetal Brain Female	brain
17	chr15:72430000-72433800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr15:72430000-72447200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:72430200-72436000	Weak transcription	Fetal Muscle Leg	muscle
20	chr15:72430400-72433800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr15:72430400-72439200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr15:72430600-72439600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:72430600-72447400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr15:72430800-72435600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr15:72431000-72433600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:72431000-72433800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:72431000-72433800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:72431000-72433800	Weak transcription	Gastric	stomach
29	chr15:72431200-72433800	Weak transcription	Fetal Intestine Large	intestine
30	chr15:72431200-72433800	Weak transcription	HSMM	muscle
31	chr15:72431400-72432800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:72431400-72447600	Weak transcription	Spleen	Spleen
33	chr15:72431600-72432600	Enhancers	Left Ventricle	heart
34	chr15:72431600-72432800	Strong transcription	Ovary	ovary
35	chr15:72431600-72435800	Enhancers	Fetal Heart	heart
36	chr15:72431800-72432600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr15:72431800-72432800	Enhancers	Psoas Muscle	Psoas
38	chr15:72431800-72434400	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr15:72432000-72432600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr15:72432000-72432600	Strong transcription	Primary T cells from cord blood	blood
41	chr15:72432000-72432600	Strong transcription	Brain Angular Gyrus	brain
42	chr15:72432000-72432600	Strong transcription	Fetal Muscle Trunk	muscle
43	chr15:72432000-72432600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr15:72432000-72432800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr15:72432000-72433000	Strong transcription	Brain Germinal Matrix	brain
46	chr15:72432000-72433200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr15:72432000-72433200	Enhancers	GM12878-XiMat	blood
48	chr15:72432400-72439000	Weak transcription	Brain Anterior Caudate	brain

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