Variant report

Variant	rs2959905
Chromosome Location	chr15:72635643-72635644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72634874..72635767-chr15:72808220..72808792,2	MCF-7	breast:
2	chr15:72631785..72633348-chr15:72635376..72637584,2	K562	blood:
3	chr15:72634541..72636091-chr15:72766237..72767971,2	MCF-7	breast:
4	chr15:72633286..72635999-chr15:72640921..72642721,3	K562	blood:
5	chr15:72521137..72522908-chr15:72633930..72635737,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067225	Chromatin interaction
ENSG00000261423	Chromatin interaction
ENSG00000166233	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10851849	1.00[EUR][1000 genomes]
rs11072348	1.00[EUR][1000 genomes]
rs11072352	1.00[EUR][1000 genomes]
rs12593333	1.00[EUR][1000 genomes]
rs12903688	1.00[EUR][1000 genomes]
rs1457030	1.00[EUR][1000 genomes]
rs1800431	1.00[EUR][1000 genomes]
rs2415131	1.00[EUR][1000 genomes]
rs2856926	1.00[EUR][1000 genomes]
rs2912204	0.88[AFR][1000 genomes]
rs2912208	1.00[EUR][1000 genomes]
rs2912209	1.00[EUR][1000 genomes]
rs2912211	1.00[EUR][1000 genomes]
rs2912212	1.00[EUR][1000 genomes]
rs2912213	1.00[EUR][1000 genomes]
rs2912215	0.82[AFR][1000 genomes]
rs2912218	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2912222	0.88[AFR][1000 genomes]
rs2912224	0.84[AFR][1000 genomes]
rs2912225	0.83[AFR][1000 genomes]
rs2912232	1.00[EUR][1000 genomes]
rs2925647	1.00[EUR][1000 genomes]
rs2925651	1.00[EUR][1000 genomes]
rs2957371	1.00[EUR][1000 genomes]
rs2959901	1.00[EUR][1000 genomes]
rs2959902	1.00[EUR][1000 genomes]
rs2959907	1.00[EUR][1000 genomes]
rs2959916	0.88[AFR][1000 genomes]
rs2959917	0.88[AFR][1000 genomes]
rs2959918	0.88[AFR][1000 genomes]
rs2959919	0.88[AFR][1000 genomes]
rs2959920	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2959923	0.88[AFR][1000 genomes]
rs2959924	0.83[AFR][1000 genomes]
rs2959927	0.88[AFR][1000 genomes]
rs2959928	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2959929	0.88[AFR][1000 genomes]
rs2959931	0.88[AFR][1000 genomes]
rs2959933	0.84[AFR][1000 genomes]
rs2959934	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2959936	1.00[EUR][1000 genomes]
rs2959937	1.00[EUR][1000 genomes]
rs2959942	1.00[EUR][1000 genomes]
rs34511502	0.83[AFR][1000 genomes]
rs34538801	0.84[AFR][1000 genomes]
rs35293819	1.00[EUR][1000 genomes]
rs35457238	0.88[AFR][1000 genomes]
rs35514603	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4238451	1.00[EUR][1000 genomes]
rs4265763	1.00[EUR][1000 genomes]
rs4461029	1.00[EUR][1000 genomes]
rs4776587	1.00[EUR][1000 genomes]
rs4776588	1.00[EUR][1000 genomes]
rs4777487	1.00[EUR][1000 genomes]
rs4777493	1.00[EUR][1000 genomes]
rs4777502	1.00[EUR][1000 genomes]
rs6494988	1.00[EUR][1000 genomes]
rs6494989	1.00[EUR][1000 genomes]
rs6494995	1.00[EUR][1000 genomes]
rs71411063	0.84[AFR][1000 genomes]
rs7170173	1.00[EUR][1000 genomes]
rs7171097	1.00[EUR][1000 genomes]
rs7173348	1.00[EUR][1000 genomes]
rs7173532	1.00[EUR][1000 genomes]
rs7177512	1.00[EUR][1000 genomes]
rs7179691	1.00[EUR][1000 genomes]
rs7180934	1.00[EUR][1000 genomes]
rs8034892	1.00[EUR][1000 genomes]
rs8037749	1.00[EUR][1000 genomes]
rs930871	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72613000-72636000	Weak transcription	Right Ventricle	heart
2	chr15:72613000-72636400	Weak transcription	Gastric	stomach
3	chr15:72613000-72637000	Weak transcription	Colonic Mucosa	Colon
4	chr15:72613200-72635800	Weak transcription	Pancreas	Pancrea
5	chr15:72613200-72636000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:72613200-72636200	Weak transcription	HSMMtube	muscle
7	chr15:72613200-72651000	Weak transcription	Stomach Mucosa	stomach
8	chr15:72613200-72666800	Weak transcription	Fetal Heart	heart
9	chr15:72613400-72635800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr15:72613400-72636600	Weak transcription	HSMM	muscle
11	chr15:72613400-72638000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr15:72613400-72667600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:72613800-72636400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr15:72614000-72636200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr15:72614000-72636400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr15:72614000-72642400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr15:72618800-72636800	Weak transcription	Fetal Kidney	kidney
18	chr15:72619600-72635800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:72619600-72636200	Weak transcription	Brain Hippocampus Middle	brain
20	chr15:72619800-72636200	Weak transcription	Brain Substantia Nigra	brain
21	chr15:72619800-72637600	Weak transcription	Psoas Muscle	Psoas
22	chr15:72622200-72636800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr15:72624200-72635800	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr15:72625400-72636800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr15:72627800-72635800	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr15:72627800-72650400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:72629000-72636800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:72629200-72649600	Strong transcription	Left Ventricle	heart
29	chr15:72629800-72649200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr15:72630000-72649200	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr15:72630200-72636200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:72630200-72656200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr15:72630400-72635800	Weak transcription	Brain Anterior Caudate	brain
34	chr15:72631000-72636200	Weak transcription	Esophagus	oesophagus
35	chr15:72631000-72641400	Weak transcription	Fetal Brain Male	brain
36	chr15:72631400-72640000	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr15:72632400-72636400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr15:72632400-72638000	Weak transcription	Small Intestine	intestine
39	chr15:72632400-72650000	Weak transcription	Right Atrium	heart
40	chr15:72632600-72637800	Strong transcription	Fetal Intestine Small	intestine
41	chr15:72632600-72637800	Weak transcription	NHEK	skin
42	chr15:72632600-72649600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr15:72632800-72635800	Weak transcription	Colon Smooth Muscle	Colon
44	chr15:72632800-72635800	Weak transcription	NHLF	lung
45	chr15:72632800-72635800	Weak transcription	Osteobl	bone
46	chr15:72632800-72636000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr15:72632800-72636000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr15:72632800-72636800	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr15:72632800-72636800	Weak transcription	NH-A	brain
50	chr15:72632800-72649400	Strong transcription	Adipose Nuclei	Adipose

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