Variant report

Variant	rs7173348
Chromosome Location	chr15:72531674-72531675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72526714..72532102-chr15:72561781..72566953,8	K562	blood:
2	chr15:72527394..72534715-chr15:72562814..72566489,12	MCF-7	breast:
3	chr15:72530629..72532313-chr15:72532642..72534187,2	K562	blood:
4	chr15:72529508..72531983-chr15:72540363..72542642,2	MCF-7	breast:
5	chr15:72527933..72532527-chr15:72562459..72567122,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137817	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10851849	1.00[EUR][1000 genomes]
rs11072348	1.00[EUR][1000 genomes]
rs11072352	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12593333	1.00[EUR][1000 genomes]
rs12903688	1.00[EUR][1000 genomes]
rs1457030	1.00[EUR][1000 genomes]
rs1598714	1.00[EUR][1000 genomes]
rs1800431	1.00[EUR][1000 genomes]
rs2415131	1.00[EUR][1000 genomes]
rs2856926	1.00[EUR][1000 genomes]
rs2912208	1.00[EUR][1000 genomes]
rs2912209	1.00[EUR][1000 genomes]
rs2912211	1.00[EUR][1000 genomes]
rs2912212	1.00[EUR][1000 genomes]
rs2912213	1.00[EUR][1000 genomes]
rs2912218	1.00[EUR][1000 genomes]
rs2912232	1.00[EUR][1000 genomes]
rs2925647	1.00[EUR][1000 genomes]
rs2925651	1.00[EUR][1000 genomes]
rs2929516	1.00[EUR][1000 genomes]
rs2929520	1.00[EUR][1000 genomes]
rs2929523	1.00[EUR][1000 genomes]
rs2957367	1.00[EUR][1000 genomes]
rs2957370	1.00[EUR][1000 genomes]
rs2957371	1.00[EUR][1000 genomes]
rs2957722	1.00[EUR][1000 genomes]
rs2959901	1.00[EUR][1000 genomes]
rs2959902	1.00[EUR][1000 genomes]
rs2959905	1.00[EUR][1000 genomes]
rs2959907	1.00[EUR][1000 genomes]
rs2959920	1.00[EUR][1000 genomes]
rs2959928	1.00[EUR][1000 genomes]
rs2959934	1.00[EUR][1000 genomes]
rs2959936	1.00[EUR][1000 genomes]
rs2959937	1.00[EUR][1000 genomes]
rs2959942	1.00[EUR][1000 genomes]
rs35293819	1.00[EUR][1000 genomes]
rs35514603	1.00[EUR][1000 genomes]
rs4238451	1.00[EUR][1000 genomes]
rs4265763	1.00[EUR][1000 genomes]
rs4461029	1.00[EUR][1000 genomes]
rs4776587	1.00[EUR][1000 genomes]
rs4776588	1.00[ASW][hapmap];0.83[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4777487	1.00[EUR][1000 genomes]
rs4777493	0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs4777502	1.00[EUR][1000 genomes]
rs56168468	1.00[EUR][1000 genomes]
rs62022784	0.97[AFR][1000 genomes]
rs6494988	1.00[EUR][1000 genomes]
rs6494989	1.00[EUR][1000 genomes]
rs6494995	1.00[EUR][1000 genomes]
rs7170173	1.00[EUR][1000 genomes]
rs7171097	1.00[EUR][1000 genomes]
rs7173532	1.00[EUR][1000 genomes]
rs7177512	1.00[EUR][1000 genomes]
rs7179691	1.00[EUR][1000 genomes]
rs7180934	1.00[EUR][1000 genomes]
rs8031658	1.00[EUR][1000 genomes]
rs8034892	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8037749	1.00[EUR][1000 genomes]
rs930871	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72524400-72532000	Weak transcription	Brain Angular Gyrus	brain
2	chr15:72524400-72533000	Weak transcription	Gastric	stomach
3	chr15:72524400-72533200	Weak transcription	Ovary	ovary
4	chr15:72524400-72533400	Weak transcription	Pancreas	Pancrea
5	chr15:72524600-72532200	Weak transcription	Liver	Liver
6	chr15:72524600-72532600	Weak transcription	Right Ventricle	heart
7	chr15:72524600-72533000	Weak transcription	Aorta	Aorta
8	chr15:72524800-72533000	Weak transcription	Thymus	Thymus
9	chr15:72524800-72533400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:72524800-72533400	Weak transcription	Brain Substantia Nigra	brain
11	chr15:72524800-72533600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:72524800-72551400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:72525000-72532800	Weak transcription	Brain Germinal Matrix	brain
14	chr15:72525000-72533000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr15:72525000-72533400	Weak transcription	Colon Smooth Muscle	Colon
16	chr15:72525000-72533400	Weak transcription	Fetal Kidney	kidney
17	chr15:72525000-72533400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:72525200-72532000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr15:72525200-72532200	Weak transcription	Fetal Intestine Large	intestine
20	chr15:72525200-72533000	Weak transcription	Fetal Brain Male	brain
21	chr15:72525200-72533000	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr15:72525200-72533200	Weak transcription	Fetal Intestine Small	intestine
23	chr15:72525400-72548600	Weak transcription	Fetal Heart	heart
24	chr15:72525600-72532200	Weak transcription	Fetal Lung	lung
25	chr15:72525600-72532200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr15:72525600-72532400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:72529200-72536200	Strong transcription	Fetal Stomach	stomach
28	chr15:72529600-72532000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr15:72529600-72532200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:72529600-72533000	Weak transcription	Spleen	Spleen
31	chr15:72529600-72533400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:72529800-72532600	Weak transcription	Left Ventricle	heart
33	chr15:72529800-72532800	Weak transcription	Brain Hippocampus Middle	brain
34	chr15:72529800-72533200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:72529800-72533400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr15:72530000-72532000	Weak transcription	Primary T cells from cord blood	blood
37	chr15:72530000-72532000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr15:72530000-72532000	Weak transcription	Psoas Muscle	Psoas
39	chr15:72530000-72532200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr15:72530000-72532200	Weak transcription	Fetal Thymus	thymus
41	chr15:72530000-72532200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr15:72530000-72532400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr15:72530000-72532600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr15:72530000-72532600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:72530000-72532800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr15:72530000-72533000	Weak transcription	Lung	lung
47	chr15:72530000-72533000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr15:72530000-72533000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr15:72530000-72533200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr15:72530000-72533600	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links