Variant report

Variant	rs4776588
Chromosome Location	chr15:72535738-72535739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72532567..72537112-chr15:72562138..72566165,7	MCF-7	breast:
2	chr15:72498523..72500643-chr15:72535160..72537562,2	K562	blood:

Variant related genes	Relation type
ENSG00000137817	Chromatin interaction
ENSG00000067225	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10851849	1.00[EUR][1000 genomes]
rs11072348	1.00[EUR][1000 genomes]
rs11072352	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12593333	1.00[EUR][1000 genomes]
rs12903688	1.00[EUR][1000 genomes]
rs1457030	1.00[EUR][1000 genomes]
rs1598714	1.00[EUR][1000 genomes]
rs1800431	1.00[EUR][1000 genomes]
rs2415131	1.00[EUR][1000 genomes]
rs2856926	1.00[EUR][1000 genomes]
rs2912208	1.00[EUR][1000 genomes]
rs2912209	1.00[EUR][1000 genomes]
rs2912211	1.00[EUR][1000 genomes]
rs2912212	1.00[EUR][1000 genomes]
rs2912213	1.00[EUR][1000 genomes]
rs2912218	1.00[EUR][1000 genomes]
rs2912232	1.00[EUR][1000 genomes]
rs2925647	1.00[EUR][1000 genomes]
rs2925651	1.00[EUR][1000 genomes]
rs2929516	1.00[EUR][1000 genomes]
rs2929520	1.00[EUR][1000 genomes]
rs2929523	1.00[EUR][1000 genomes]
rs2957367	1.00[EUR][1000 genomes]
rs2957370	1.00[EUR][1000 genomes]
rs2957371	1.00[EUR][1000 genomes]
rs2957722	1.00[EUR][1000 genomes]
rs2959901	1.00[EUR][1000 genomes]
rs2959902	1.00[EUR][1000 genomes]
rs2959905	1.00[EUR][1000 genomes]
rs2959907	1.00[EUR][1000 genomes]
rs2959920	1.00[EUR][1000 genomes]
rs2959928	1.00[EUR][1000 genomes]
rs2959934	1.00[EUR][1000 genomes]
rs2959936	1.00[EUR][1000 genomes]
rs2959937	1.00[EUR][1000 genomes]
rs2959942	1.00[EUR][1000 genomes]
rs35293819	1.00[EUR][1000 genomes]
rs35514603	1.00[EUR][1000 genomes]
rs4238451	1.00[EUR][1000 genomes]
rs4265763	1.00[EUR][1000 genomes]
rs4461029	1.00[EUR][1000 genomes]
rs4776587	1.00[EUR][1000 genomes]
rs4777487	1.00[EUR][1000 genomes]
rs4777493	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs4777502	1.00[EUR][1000 genomes]
rs56168468	1.00[EUR][1000 genomes]
rs62022784	0.88[AFR][1000 genomes]
rs6494988	1.00[EUR][1000 genomes]
rs6494989	1.00[EUR][1000 genomes]
rs6494995	1.00[EUR][1000 genomes]
rs7170173	1.00[EUR][1000 genomes]
rs7171097	1.00[EUR][1000 genomes]
rs7173348	1.00[ASW][hapmap];0.83[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7173532	1.00[EUR][1000 genomes]
rs7177512	1.00[EUR][1000 genomes]
rs7179691	1.00[EUR][1000 genomes]
rs7180934	1.00[EUR][1000 genomes]
rs8031658	1.00[EUR][1000 genomes]
rs8034892	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8037749	1.00[EUR][1000 genomes]
rs930871	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72524800-72551400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:72525400-72548600	Weak transcription	Fetal Heart	heart
3	chr15:72529200-72536200	Strong transcription	Fetal Stomach	stomach
4	chr15:72530400-72542200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:72530400-72563400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:72530600-72536400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:72530600-72542000	Weak transcription	Stomach Mucosa	stomach
8	chr15:72530600-72545600	Weak transcription	Small Intestine	intestine
9	chr15:72530800-72561200	Strong transcription	Adipose Nuclei	Adipose
10	chr15:72531000-72537000	Strong transcription	Skeletal Muscle Female	skeletal muscle
11	chr15:72531000-72539000	Strong transcription	Placenta	Placenta
12	chr15:72531000-72562400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:72531000-72563000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:72531000-72563000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:72531000-72563400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:72531200-72539000	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr15:72531200-72562800	Strong transcription	Fetal Muscle Leg	muscle
18	chr15:72531400-72537000	Strong transcription	HSMMtube	muscle
19	chr15:72531400-72538600	Strong transcription	Duodenum Smooth Muscle	Duodenum
20	chr15:72531400-72538800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:72531400-72542000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr15:72531600-72539800	Strong transcription	Fetal Brain Female	brain
23	chr15:72531800-72561400	Strong transcription	Stomach Smooth Muscle	stomach
24	chr15:72532000-72537000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr15:72532000-72537000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:72532000-72537200	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr15:72532000-72537400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:72532000-72537400	Strong transcription	Brain Angular Gyrus	brain
29	chr15:72532000-72537400	Strong transcription	Psoas Muscle	Psoas
30	chr15:72532000-72539800	Strong transcription	Primary T cells from cord blood	blood
31	chr15:72532000-72543200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr15:72532000-72562600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:72532200-72536400	Strong transcription	Duodenum Mucosa	Duodenum
34	chr15:72532200-72537000	Strong transcription	Osteobl	bone
35	chr15:72532200-72537200	Strong transcription	Fetal Lung	lung
36	chr15:72532200-72537200	Strong transcription	NH-A	brain
37	chr15:72532200-72538000	Strong transcription	Primary B cells from cord blood	blood
38	chr15:72532200-72538200	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr15:72532200-72538200	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr15:72532200-72538400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr15:72532200-72538400	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr15:72532200-72538400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:72532200-72538800	Strong transcription	Fetal Muscle Trunk	muscle
44	chr15:72532200-72561000	Strong transcription	Liver	Liver
45	chr15:72532200-72561000	Strong transcription	Fetal Intestine Large	intestine
46	chr15:72532200-72561600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr15:72532200-72562200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr15:72532200-72563000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:72532400-72537000	Strong transcription	NHEK	skin
50	chr15:72532400-72538400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links