Variant report

Variant	rs2957722
Chromosome Location	chr15:72342842-72342843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10851849	1.00[EUR][1000 genomes]
rs11072348	1.00[EUR][1000 genomes]
rs11072352	1.00[EUR][1000 genomes]
rs12903688	1.00[EUR][1000 genomes]
rs1457030	1.00[EUR][1000 genomes]
rs1598714	1.00[EUR][1000 genomes]
rs2254976	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2415131	1.00[EUR][1000 genomes]
rs2625531	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2723338	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2742321	1.00[EUR][1000 genomes]
rs2856926	1.00[EUR][1000 genomes]
rs2912208	1.00[EUR][1000 genomes]
rs2912209	1.00[EUR][1000 genomes]
rs2912211	1.00[EUR][1000 genomes]
rs2912212	1.00[EUR][1000 genomes]
rs2912213	1.00[EUR][1000 genomes]
rs2912232	1.00[EUR][1000 genomes]
rs2925647	1.00[EUR][1000 genomes]
rs2925651	1.00[EUR][1000 genomes]
rs2929516	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2929520	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2929523	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2957367	1.00[EUR][1000 genomes]
rs2957370	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2957371	1.00[EUR][1000 genomes]
rs2959901	1.00[EUR][1000 genomes]
rs2959902	1.00[EUR][1000 genomes]
rs2959907	1.00[EUR][1000 genomes]
rs2959934	1.00[EUR][1000 genomes]
rs2959936	1.00[EUR][1000 genomes]
rs2959937	1.00[EUR][1000 genomes]
rs2959942	1.00[EUR][1000 genomes]
rs35293819	1.00[EUR][1000 genomes]
rs4238451	1.00[EUR][1000 genomes]
rs4461029	1.00[EUR][1000 genomes]
rs4776587	1.00[EUR][1000 genomes]
rs4776588	1.00[EUR][1000 genomes]
rs4777487	1.00[EUR][1000 genomes]
rs4777493	1.00[EUR][1000 genomes]
rs56168468	1.00[EUR][1000 genomes]
rs6494988	1.00[EUR][1000 genomes]
rs6494989	1.00[EUR][1000 genomes]
rs6494995	1.00[EUR][1000 genomes]
rs7170173	1.00[EUR][1000 genomes]
rs7171097	1.00[EUR][1000 genomes]
rs7173348	1.00[EUR][1000 genomes]
rs7173532	1.00[EUR][1000 genomes]
rs7177512	1.00[EUR][1000 genomes]
rs7179691	1.00[EUR][1000 genomes]
rs7180934	1.00[EUR][1000 genomes]
rs8031658	1.00[EUR][1000 genomes]
rs8034892	1.00[EUR][1000 genomes]
rs930871	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
6	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72226800-72343600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr15:72282800-72347000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:72282800-72349800	Weak transcription	Brain Hippocampus Middle	brain
4	chr15:72298400-72344000	Weak transcription	Spleen	Spleen
5	chr15:72300000-72351000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:72301000-72361200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr15:72302200-72349400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr15:72326600-72343600	Weak transcription	Right Ventricle	heart
9	chr15:72328400-72349800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:72330000-72343400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:72330000-72349800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:72330000-72349800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr15:72331000-72344200	Weak transcription	GM12878-XiMat	blood
14	chr15:72331200-72343600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:72332400-72343600	Weak transcription	Gastric	stomach
16	chr15:72332600-72343400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:72332600-72343800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:72332800-72343400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr15:72332800-72343600	Weak transcription	Fetal Intestine Small	intestine
20	chr15:72333000-72343600	Weak transcription	Brain Germinal Matrix	brain
21	chr15:72333200-72353800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr15:72334000-72355000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr15:72334200-72343600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:72334200-72343600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr15:72334400-72350000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr15:72337000-72349800	Weak transcription	Colon Smooth Muscle	Colon
27	chr15:72338600-72343400	Weak transcription	Esophagus	oesophagus
28	chr15:72338800-72343400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:72338800-72343600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr15:72338800-72343600	Weak transcription	Fetal Muscle Leg	muscle
31	chr15:72338800-72343600	Weak transcription	Lung	lung
32	chr15:72338800-72344800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr15:72338800-72349800	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr15:72338800-72349800	Weak transcription	Adipose Nuclei	Adipose
35	chr15:72338800-72349800	Weak transcription	Liver	Liver
36	chr15:72338800-72349800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr15:72338800-72349800	Weak transcription	Small Intestine	intestine
38	chr15:72338800-72349800	Weak transcription	A549	lung
39	chr15:72338800-72349800	Weak transcription	HSMM	muscle
40	chr15:72338800-72350000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr15:72338800-72350200	Weak transcription	Primary T cells from cord blood	blood
42	chr15:72338800-72352800	Weak transcription	Left Ventricle	heart
43	chr15:72338800-72353000	Weak transcription	Placenta	Placenta
44	chr15:72339000-72343000	Weak transcription	NHDF-Ad	bronchial
45	chr15:72339000-72343800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr15:72339000-72343800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:72339000-72346400	Weak transcription	Primary B cells from peripheral blood	blood
48	chr15:72339000-72352800	Weak transcription	Ovary	ovary
49	chr15:72339000-72353000	Weak transcription	Stomach Smooth Muscle	stomach
50	chr15:72339000-72353600	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links