Variant report

Variant	rs8034892
Chromosome Location	chr15:72562530-72562531
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:72562435-72566033	A549	lung:	n/a	chr15:72563158-72563179 chr15:72563169-72563178

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:72514333..72526693-chr15:72558323..72568559,52	MCF-7	breast:
2	chr15:72548498..72554612-chr15:72558312..72566000,13	MCF-7	breast:
3	chr15:72555118..72559591-chr15:72562362..72567008,6	MCF-7	breast:
4	chr15:72520024..72526293-chr15:72562525..72566333,14	K562	blood:
5	chr15:72549975..72552045-chr15:72561335..72563310,2	K562	blood:
6	chr15:72518424..72531344-chr15:72562525..72571046,23	K562	blood:
7	chr15:72561194..72564093-chr15:72666798..72669351,2	MCF-7	breast:
8	chr15:72540888..72544821-chr15:72560401..72563677,4	MCF-7	breast:
9	chr15:72541554..72543753-chr15:72562332..72564348,2	K562	blood:
10	chr15:72550392..72553636-chr15:72562522..72566048,4	MCF-7	breast:

No data

Variant related genes	Relation type
PARP6	TF binding region
ENSG00000067225	Chromatin interaction
ENSG00000213614	Chromatin interaction
ENSG00000137817	Chromatin interaction
ENSG00000260729	Chromatin interaction
ENSG00000260339	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10851849	1.00[EUR][1000 genomes]
rs10851852	0.83[AMR][1000 genomes]
rs10851853	0.83[AMR][1000 genomes]
rs11072348	1.00[EUR][1000 genomes]
rs11072352	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12593333	1.00[EUR][1000 genomes]
rs12903688	1.00[EUR][1000 genomes]
rs1457030	1.00[EUR][1000 genomes]
rs1598714	1.00[EUR][1000 genomes]
rs1800431	1.00[EUR][1000 genomes]
rs2415131	1.00[EUR][1000 genomes]
rs2856926	1.00[EUR][1000 genomes]
rs2912207	0.83[AMR][1000 genomes]
rs2912208	1.00[EUR][1000 genomes]
rs2912209	1.00[EUR][1000 genomes]
rs2912211	1.00[EUR][1000 genomes]
rs2912212	1.00[EUR][1000 genomes]
rs2912213	1.00[EUR][1000 genomes]
rs2912218	1.00[EUR][1000 genomes]
rs2912230	1.00[AMR][1000 genomes]
rs2912232	1.00[EUR][1000 genomes]
rs2925647	1.00[EUR][1000 genomes]
rs2925651	1.00[EUR][1000 genomes]
rs2929516	1.00[EUR][1000 genomes]
rs2929520	1.00[EUR][1000 genomes]
rs2957367	1.00[EUR][1000 genomes]
rs2957370	1.00[EUR][1000 genomes]
rs2957371	1.00[EUR][1000 genomes]
rs2957722	1.00[EUR][1000 genomes]
rs2959901	1.00[EUR][1000 genomes]
rs2959902	1.00[EUR][1000 genomes]
rs2959905	1.00[EUR][1000 genomes]
rs2959907	1.00[EUR][1000 genomes]
rs2959920	1.00[EUR][1000 genomes]
rs2959928	1.00[EUR][1000 genomes]
rs2959934	1.00[EUR][1000 genomes]
rs2959936	1.00[EUR][1000 genomes]
rs2959937	1.00[EUR][1000 genomes]
rs2959942	1.00[EUR][1000 genomes]
rs35293819	1.00[EUR][1000 genomes]
rs35514603	1.00[EUR][1000 genomes]
rs4238451	1.00[EUR][1000 genomes]
rs4265763	1.00[EUR][1000 genomes]
rs4461029	1.00[EUR][1000 genomes]
rs4776587	1.00[EUR][1000 genomes]
rs4776588	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4777487	1.00[EUR][1000 genomes]
rs4777493	1.00[EUR][1000 genomes]
rs4777502	1.00[EUR][1000 genomes]
rs62022784	0.95[AFR][1000 genomes]
rs6494988	1.00[EUR][1000 genomes]
rs6494989	1.00[EUR][1000 genomes]
rs6494995	1.00[EUR][1000 genomes]
rs7167909	0.83[AMR][1000 genomes]
rs7170173	1.00[EUR][1000 genomes]
rs7170516	0.83[AMR][1000 genomes]
rs7171097	1.00[EUR][1000 genomes]
rs7173348	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7173532	1.00[EUR][1000 genomes]
rs7177512	1.00[EUR][1000 genomes]
rs7179691	1.00[EUR][1000 genomes]
rs7180934	1.00[EUR][1000 genomes]
rs7182637	0.83[AMR][1000 genomes]
rs8031658	1.00[EUR][1000 genomes]
rs8037749	1.00[EUR][1000 genomes]
rs930871	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
4	nsv1601	chr15:72549885-72585176	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72530400-72563400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:72531000-72563000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:72531000-72563000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:72531000-72563400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:72531200-72562800	Strong transcription	Fetal Muscle Leg	muscle
6	chr15:72532000-72562600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:72532200-72563000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:72532400-72562600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr15:72532600-72562800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:72532800-72563000	Strong transcription	HSMM	muscle
11	chr15:72533200-72562600	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr15:72536600-72564000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:72537200-72564200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr15:72537600-72563400	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr15:72539400-72562600	Strong transcription	Osteobl	bone
16	chr15:72539600-72562800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:72539800-72562800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr15:72540200-72562800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:72540200-72563200	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr15:72540400-72562800	Strong transcription	A549	lung
21	chr15:72540400-72563400	Strong transcription	Fetal Muscle Trunk	muscle
22	chr15:72540600-72562600	Strong transcription	Brain Inferior Temporal Lobe	brain
23	chr15:72540600-72562600	Strong transcription	Fetal Brain Female	brain
24	chr15:72540800-72562600	Strong transcription	Primary B cells from peripheral blood	blood
25	chr15:72541400-72562800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:72551800-72563200	Strong transcription	Fetal Stomach	stomach
27	chr15:72556000-72562800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:72557000-72563200	Strong transcription	NHEK	skin
29	chr15:72557400-72563000	Weak transcription	Fetal Heart	heart
30	chr15:72558200-72563000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr15:72559200-72563000	Weak transcription	Fetal Brain Male	brain
32	chr15:72559200-72563400	Weak transcription	HUVEC	blood vessel
33	chr15:72559400-72564200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:72559400-72564200	Weak transcription	Esophagus	oesophagus
35	chr15:72559400-72564200	Weak transcription	Pancreas	Pancrea
36	chr15:72559600-72563000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr15:72559600-72563400	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr15:72560000-72562800	Weak transcription	HMEC	breast
39	chr15:72560000-72563000	Weak transcription	Small Intestine	intestine
40	chr15:72560000-72563200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr15:72560000-72563400	Weak transcription	Fetal Thymus	thymus
42	chr15:72560000-72563400	Weak transcription	NHLF	lung
43	chr15:72560000-72563600	Weak transcription	Rectal Smooth Muscle	rectum
44	chr15:72560000-72563800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr15:72560000-72563800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr15:72560000-72564000	Weak transcription	Stomach Mucosa	stomach
47	chr15:72560000-72564200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr15:72560000-72564200	Weak transcription	Aorta	Aorta
49	chr15:72560200-72564000	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr15:72560200-72564200	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links