Variant report

Variant	rs2929520
Chromosome Location	chr15:72350323-72350324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10851849	1.00[EUR][1000 genomes]
rs11072348	1.00[EUR][1000 genomes]
rs11072352	1.00[EUR][1000 genomes]
rs12438985	1.00[CHD][hapmap]
rs12903688	1.00[EUR][1000 genomes]
rs1457030	1.00[EUR][1000 genomes]
rs1598714	1.00[EUR][1000 genomes]
rs2254976	1.00[EUR][1000 genomes]
rs2415131	1.00[EUR][1000 genomes]
rs2625531	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2723338	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2742321	1.00[EUR][1000 genomes]
rs28552371	1.00[CHD][hapmap]
rs2856926	1.00[EUR][1000 genomes]
rs2912208	1.00[EUR][1000 genomes]
rs2912209	1.00[EUR][1000 genomes]
rs2912211	1.00[EUR][1000 genomes]
rs2912212	1.00[EUR][1000 genomes]
rs2912213	1.00[EUR][1000 genomes]
rs2912232	1.00[EUR][1000 genomes]
rs2925647	1.00[EUR][1000 genomes]
rs2925651	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2929516	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2929523	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2957363	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs2957367	1.00[EUR][1000 genomes]
rs2957370	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2957371	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2957722	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2959901	1.00[EUR][1000 genomes]
rs2959902	1.00[EUR][1000 genomes]
rs2959907	1.00[EUR][1000 genomes]
rs2959928	1.00[EUR][1000 genomes]
rs2959934	1.00[EUR][1000 genomes]
rs2959936	1.00[EUR][1000 genomes]
rs2959937	1.00[EUR][1000 genomes]
rs2959942	1.00[EUR][1000 genomes]
rs35293819	1.00[EUR][1000 genomes]
rs4238451	1.00[EUR][1000 genomes]
rs4461029	1.00[EUR][1000 genomes]
rs4776587	1.00[EUR][1000 genomes]
rs4776588	1.00[EUR][1000 genomes]
rs4777487	1.00[EUR][1000 genomes]
rs4777493	1.00[EUR][1000 genomes]
rs56168468	1.00[EUR][1000 genomes]
rs6494988	1.00[EUR][1000 genomes]
rs6494989	1.00[EUR][1000 genomes]
rs6494995	1.00[EUR][1000 genomes]
rs7170173	1.00[EUR][1000 genomes]
rs7171097	1.00[EUR][1000 genomes]
rs7173348	1.00[EUR][1000 genomes]
rs7173532	1.00[EUR][1000 genomes]
rs7177512	1.00[EUR][1000 genomes]
rs7179691	1.00[EUR][1000 genomes]
rs7180934	1.00[EUR][1000 genomes]
rs8031658	1.00[EUR][1000 genomes]
rs8034892	1.00[EUR][1000 genomes]
rs8192346	1.00[CHD][hapmap]
rs930871	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
6	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72300000-72351000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr15:72301000-72361200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr15:72333200-72353800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr15:72334000-72355000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr15:72338800-72352800	Weak transcription	Left Ventricle	heart
6	chr15:72338800-72353000	Weak transcription	Placenta	Placenta
7	chr15:72339000-72352800	Weak transcription	Ovary	ovary
8	chr15:72339000-72353000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr15:72339000-72353600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr15:72339000-72363400	Weak transcription	Primary B cells from cord blood	blood
11	chr15:72342000-72352800	Weak transcription	Right Atrium	heart
12	chr15:72342800-72352800	Weak transcription	Thymus	Thymus
13	chr15:72343800-72353200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:72344000-72355200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:72344400-72353000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:72344400-72353600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr15:72344800-72353200	Weak transcription	Lung	lung
18	chr15:72345000-72352800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:72345200-72352800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr15:72345200-72352800	Weak transcription	Fetal Muscle Leg	muscle
21	chr15:72345200-72353000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:72345200-72353000	Weak transcription	Esophagus	oesophagus
23	chr15:72345200-72353000	Weak transcription	Fetal Stomach	stomach
24	chr15:72345400-72353200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:72349400-72351800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:72349600-72351400	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr15:72349600-72351400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr15:72349600-72356400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:72349800-72350400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr15:72349800-72350400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:72349800-72350400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:72349800-72350400	Enhancers	Liver	Liver
33	chr15:72349800-72350400	Active TSS	Brain Cingulate Gyrus	brain
34	chr15:72349800-72350400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
35	chr15:72349800-72350400	Enhancers	Colon Smooth Muscle	Colon
36	chr15:72349800-72350400	Enhancers	Duodenum Mucosa	Duodenum
37	chr15:72349800-72350400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr15:72349800-72350400	Enhancers	Fetal Heart	heart
39	chr15:72349800-72350400	Enhancers	Fetal Kidney	kidney
40	chr15:72349800-72350400	Enhancers	Small Intestine	intestine
41	chr15:72349800-72350400	Enhancers	Hela-S3	cervix
42	chr15:72349800-72350400	Enhancers	HSMM	muscle
43	chr15:72349800-72350600	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr15:72349800-72350600	Enhancers	Fetal Intestine Large	intestine
45	chr15:72349800-72350600	Enhancers	Rectal Smooth Muscle	rectum
46	chr15:72349800-72350600	Flanking Active TSS	A549	lung
47	chr15:72349800-72350800	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr15:72349800-72350800	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr15:72349800-72351000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr15:72349800-72351600	Enhancers	Fetal Intestine Small	intestine

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