Variant report

Variant	rs2742321
Chromosome Location	chr15:72110923-72110924
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs11072321	1.00[EUR][1000 genomes]
rs11072341	0.83[AFR][1000 genomes]
rs1392988	1.00[EUR][1000 genomes]
rs1471688	0.87[AFR][1000 genomes]
rs1501420	1.00[EUR][1000 genomes]
rs1545825	0.87[AFR][1000 genomes]
rs1604334	1.00[EUR][1000 genomes]
rs16953747	0.93[AFR][1000 genomes]
rs16956188	1.00[EUR][1000 genomes]
rs1871834	1.00[ASW][hapmap];0.83[LWK][hapmap];0.83[MKK][hapmap]
rs1905337	0.87[AFR][1000 genomes]
rs2134064	1.00[EUR][1000 genomes]
rs2254976	1.00[EUR][1000 genomes]
rs2415124	0.96[AFR][1000 genomes]
rs2415125	0.89[YRI][hapmap];0.90[AFR][1000 genomes]
rs2415129	1.00[ASW][hapmap];0.89[LWK][hapmap];0.88[MKK][hapmap];0.85[AFR][1000 genomes]
rs2625531	1.00[EUR][1000 genomes]
rs2723338	1.00[EUR][1000 genomes]
rs2723357	0.93[AFR][1000 genomes]
rs28663101	1.00[EUR][1000 genomes]
rs2899774	0.81[AFR][1000 genomes]
rs2929515	0.88[AFR][1000 genomes]
rs2929516	1.00[EUR][1000 genomes]
rs2929520	1.00[EUR][1000 genomes]
rs2929521	0.80[AFR][1000 genomes]
rs2929522	0.85[AFR][1000 genomes]
rs2929523	1.00[EUR][1000 genomes]
rs2929530	1.00[ASW][hapmap];0.91[LWK][hapmap];0.94[MKK][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs2929531	1.00[ASW][hapmap];0.89[LWK][hapmap];0.94[MKK][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes]
rs2957367	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2957369	0.85[AFR][1000 genomes]
rs2957370	1.00[EUR][1000 genomes]
rs2957722	1.00[EUR][1000 genomes]
rs2957729	0.88[AFR][1000 genomes]
rs2957733	0.85[AFR][1000 genomes]
rs2957747	0.85[AFR][1000 genomes]
rs2957749	0.83[AFR][1000 genomes]
rs35696756	0.93[AFR][1000 genomes]
rs4404024	1.00[EUR][1000 genomes]
rs4511484	0.81[AFR][1000 genomes]
rs56168468	1.00[EUR][1000 genomes]
rs57874901	1.00[EUR][1000 genomes]
rs6494976	0.80[AFR][1000 genomes]
rs73430241	1.00[EUR][1000 genomes]
rs73430260	1.00[EUR][1000 genomes]
rs73430266	1.00[EUR][1000 genomes]
rs73430269	1.00[EUR][1000 genomes]
rs73432419	1.00[EUR][1000 genomes]
rs73445792	1.00[EUR][1000 genomes]
rs8027671	1.00[EUR][1000 genomes]
rs8031658	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8032957	0.81[AFR][1000 genomes]
rs8033900	1.00[EUR][1000 genomes]
rs8034436	0.87[AFR][1000 genomes]
rs8034722	0.85[AFR][1000 genomes]
rs8034979	1.00[EUR][1000 genomes]
rs8182066	0.81[AFR][1000 genomes]
rs872472	1.00[EUR][1000 genomes]
rs905074	1.00[EUR][1000 genomes]
rs981695	0.88[YRI][hapmap];0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72100400-72112000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:72100600-72111000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:72100600-72113800	Weak transcription	Fetal Lung	lung
4	chr15:72100800-72111400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:72101200-72112600	Weak transcription	Right Atrium	heart
6	chr15:72103400-72114000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:72105600-72112400	Weak transcription	HSMMtube	muscle
8	chr15:72106000-72114200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:72106200-72113800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr15:72106800-72114400	Weak transcription	Fetal Kidney	kidney
11	chr15:72107200-72115200	Weak transcription	Fetal Stomach	stomach
12	chr15:72107600-72112000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr15:72107800-72115600	Weak transcription	Fetal Heart	heart
14	chr15:72108000-72118600	Weak transcription	Fetal Brain Female	brain
15	chr15:72108600-72111000	Weak transcription	Fetal Muscle Leg	muscle
16	chr15:72108600-72120600	Weak transcription	Fetal Brain Male	brain
17	chr15:72109600-72112800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:72110000-72113800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr15:72110600-72118200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:72110800-72116400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr15:72110800-72122800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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