Variant report

Variant	rs1604334
Chromosome Location	chr15:72004246-72004247
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:71999450..72001243-chr15:72003959..72006886,2	MCF-7	breast:
2	chr15:71999665..72001302-chr15:72002651..72004963,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11072321	1.00[EUR][1000 genomes]
rs11858936	0.97[ASN][1000 genomes]
rs12437539	0.97[ASN][1000 genomes]
rs12915432	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1392988	1.00[EUR][1000 genomes]
rs1501420	1.00[EUR][1000 genomes]
rs1501421	0.97[ASN][1000 genomes]
rs16953738	0.97[ASN][1000 genomes]
rs16956124	0.88[ASN][1000 genomes]
rs16956129	0.88[ASN][1000 genomes]
rs16956157	0.82[ASN][1000 genomes]
rs16956188	1.00[EUR][1000 genomes]
rs2047685	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2047690	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2047691	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2134064	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2254976	1.00[EUR][1000 genomes]
rs2625531	1.00[EUR][1000 genomes]
rs2723338	1.00[EUR][1000 genomes]
rs2742321	1.00[EUR][1000 genomes]
rs28663101	1.00[EUR][1000 genomes]
rs2899771	0.88[ASN][1000 genomes]
rs4328388	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4365247	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4404024	1.00[EUR][1000 genomes]
rs4776571	0.97[ASN][1000 genomes]
rs4777442	0.97[ASN][1000 genomes]
rs4777444	0.97[ASN][1000 genomes]
rs4777449	0.97[ASN][1000 genomes]
rs56790826	0.85[ASN][1000 genomes]
rs57091071	0.85[ASN][1000 genomes]
rs57874901	1.00[EUR][1000 genomes]
rs57931860	0.88[ASN][1000 genomes]
rs73430241	1.00[EUR][1000 genomes]
rs73430260	1.00[EUR][1000 genomes]
rs73430266	1.00[EUR][1000 genomes]
rs73430269	1.00[EUR][1000 genomes]
rs73430296	0.88[ASN][1000 genomes]
rs73432419	1.00[EUR][1000 genomes]
rs73445792	1.00[EUR][1000 genomes]
rs8027671	1.00[EUR][1000 genomes]
rs8033900	1.00[EUR][1000 genomes]
rs8034979	1.00[EUR][1000 genomes]
rs8036340	0.97[ASN][1000 genomes]
rs8041263	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs872472	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs872475	0.97[ASN][1000 genomes]
rs905074	1.00[EUR][1000 genomes]
rs972708	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:71998000-72009000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:71998000-72009200	Weak transcription	NHEK	skin
3	chr15:72000200-72005000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:72000800-72023400	Weak transcription	Fetal Intestine Small	intestine
5	chr15:72001400-72005600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:72001400-72005600	Weak transcription	Pancreas	Pancrea
7	chr15:72001400-72009000	Weak transcription	Lung	lung
8	chr15:72001400-72009400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr15:72002000-72008200	Weak transcription	Adipose Nuclei	Adipose
10	chr15:72002400-72008800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:72002400-72022600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:72002600-72005400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:72002600-72008800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:72002600-72022600	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:72003000-72008400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:72003000-72008400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:72003000-72008400	Weak transcription	NHLF	lung
18	chr15:72003200-72005600	Weak transcription	Gastric	stomach
19	chr15:72003200-72008600	Weak transcription	Hela-S3	cervix
20	chr15:72003200-72018000	Weak transcription	Ovary	ovary
21	chr15:72004000-72005200	Enhancers	Liver	Liver
22	chr15:72004200-72004400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:72004200-72004600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr15:72004200-72006800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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