Variant report

Variant	rs57091071
Chromosome Location	chr15:72036056-72036057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72036045..72036916-chr17:57922456..57923277,2	Hela-S3	cervix:
2	chr15:72035959..72036924-chr15:72093401..72094192,4	K562	blood:
3	chr15:72035950..72036579-chr15:72447850..72448622,2	MCF-7	breast:
4	chr15:72035964..72037219-chr15:72093215..72094100,4	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11858936	0.88[ASN][1000 genomes]
rs12437539	0.88[ASN][1000 genomes]
rs12915432	0.88[ASN][1000 genomes]
rs1501421	0.88[ASN][1000 genomes]
rs1604334	0.85[ASN][1000 genomes]
rs16953738	0.88[ASN][1000 genomes]
rs16956124	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16956129	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16956157	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2047685	0.88[ASN][1000 genomes]
rs2047690	0.88[ASN][1000 genomes]
rs2047691	0.88[ASN][1000 genomes]
rs2134064	0.85[ASN][1000 genomes]
rs2899771	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4328388	0.88[ASN][1000 genomes]
rs4365247	0.88[ASN][1000 genomes]
rs4776571	0.88[ASN][1000 genomes]
rs4776574	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4777442	0.88[ASN][1000 genomes]
rs4777444	0.88[ASN][1000 genomes]
rs4777449	0.88[ASN][1000 genomes]
rs56790826	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57874901	0.90[ASN][1000 genomes]
rs57931860	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73430296	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73432428	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73432430	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8036340	0.88[ASN][1000 genomes]
rs8041263	0.88[ASN][1000 genomes]
rs872472	0.82[ASN][1000 genomes]
rs872475	0.82[ASN][1000 genomes]
rs972708	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv904335	chr15:72018469-72064719	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72017000-72048800	Weak transcription	Placenta	Placenta
2	chr15:72020200-72039000	Weak transcription	Pancreas	Pancrea
3	chr15:72021600-72071400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:72024600-72045600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:72025400-72039200	Weak transcription	Gastric	stomach
6	chr15:72026000-72039200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr15:72027600-72040600	Weak transcription	Aorta	Aorta
8	chr15:72028400-72036600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:72029400-72036200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr15:72030200-72039800	Weak transcription	Fetal Kidney	kidney
11	chr15:72030400-72037600	Weak transcription	Fetal Muscle Leg	muscle
12	chr15:72030400-72075800	Weak transcription	Right Ventricle	heart
13	chr15:72030800-72036800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:72031000-72037600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:72031000-72039000	Weak transcription	Lung	lung
16	chr15:72031200-72039400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr15:72031200-72048200	Weak transcription	Left Ventricle	heart
18	chr15:72031800-72039200	Weak transcription	HMEC	breast
19	chr15:72032200-72039400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr15:72034600-72036200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr15:72034600-72037200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:72034600-72037200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:72034800-72037400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr15:72034800-72037400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:72035000-72036400	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr15:72035000-72037200	Weak transcription	Esophagus	oesophagus
27	chr15:72035000-72037200	Weak transcription	Fetal Stomach	stomach
28	chr15:72035000-72037200	Weak transcription	NHEK	skin
29	chr15:72035400-72036400	Enhancers	Liver	Liver
30	chr15:72035400-72039000	Enhancers	A549	lung
31	chr15:72035400-72040200	Enhancers	Fetal Intestine Large	intestine
32	chr15:72035600-72038800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr15:72035800-72037000	Enhancers	Colon Smooth Muscle	Colon
34	chr15:72036000-72036200	Enhancers	Fetal Intestine Small	intestine
35	chr15:72036000-72036400	Enhancers	Fetal Heart	heart
36	chr15:72036000-72036400	Enhancers	Fetal Lung	lung
37	chr15:72036000-72036400	Enhancers	NHLF	lung

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