Variant report

Variant	rs73432430
Chromosome Location	chr15:72044249-72044250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72040432..72042669-chr15:72043412..72046159,2	K562	blood:
2	chr15:72039979..72042756-chr15:72042762..72047195,4	MCF-7	breast:
3	chr15:72043111..72044896-chr15:72046239..72048374,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16956124	0.88[ASN][1000 genomes]
rs16956129	0.88[ASN][1000 genomes]
rs16956157	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2899771	0.88[ASN][1000 genomes]
rs4776574	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56790826	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57091071	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57874901	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57931860	0.88[ASN][1000 genomes]
rs73430296	0.88[ASN][1000 genomes]
rs73432428	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs972708	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv904335	chr15:72018469-72064719	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72017000-72048800	Weak transcription	Placenta	Placenta
2	chr15:72021600-72071400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:72024600-72045600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:72030400-72075800	Weak transcription	Right Ventricle	heart
5	chr15:72031200-72048200	Weak transcription	Left Ventricle	heart
6	chr15:72036400-72044800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr15:72036400-72045200	Weak transcription	Fetal Heart	heart
8	chr15:72036400-72071400	Weak transcription	Fetal Lung	lung
9	chr15:72039400-72050200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:72040400-72044600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:72040400-72044600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:72040600-72054200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr15:72040800-72044400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:72040800-72044800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr15:72041000-72045000	Weak transcription	Pancreas	Pancrea
16	chr15:72041000-72045800	Weak transcription	Aorta	Aorta
17	chr15:72041000-72050200	Weak transcription	Lung	lung
18	chr15:72041200-72044400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr15:72041400-72044400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr15:72041400-72044400	Weak transcription	HSMM	muscle
21	chr15:72041400-72044400	Weak transcription	HSMMtube	muscle
22	chr15:72041400-72044800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:72041400-72045200	Strong transcription	Liver	Liver
24	chr15:72041400-72050200	Weak transcription	Colonic Mucosa	Colon
25	chr15:72041400-72054200	Weak transcription	Gastric	stomach
26	chr15:72041600-72044400	Weak transcription	NH-A	brain
27	chr15:72041600-72045000	Weak transcription	Fetal Kidney	kidney
28	chr15:72041800-72044400	Weak transcription	NHLF	lung
29	chr15:72041800-72044600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:72041800-72044600	Weak transcription	Hela-S3	cervix
31	chr15:72041800-72044800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr15:72041800-72045000	Weak transcription	HMEC	breast
33	chr15:72042000-72044400	Weak transcription	Fetal Intestine Large	intestine
34	chr15:72042000-72056800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr15:72043000-72044400	Enhancers	A549	lung
36	chr15:72043200-72044400	Weak transcription	Fetal Muscle Leg	muscle
37	chr15:72043200-72050200	Weak transcription	Esophagus	oesophagus
38	chr15:72043400-72044400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:72043400-72044400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr15:72043400-72044400	Weak transcription	NHDF-Ad	bronchial
41	chr15:72043400-72044600	Weak transcription	Fetal Intestine Small	intestine
42	chr15:72043400-72044800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr15:72043400-72045000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:72043400-72045000	Weak transcription	NHEK	skin
45	chr15:72043400-72045200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr15:72043400-72049000	Weak transcription	Fetal Stomach	stomach
47	chr15:72043400-72049400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr15:72044000-72044800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:72044000-72046400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:72044200-72046200	Enhancers	Osteobl	bone

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