Variant report

Variant	rs16956157
Chromosome Location	chr15:72041944-72041945
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72039979..72042756-chr15:72042762..72047195,4	MCF-7	breast:
2	chr15:72040056..72042121-chr15:72044649..72046510,3	MCF-7	breast:
3	chr15:72040432..72042669-chr15:72043412..72046159,2	K562	blood:
4	chr15:72036167..72038403-chr15:72039490..72042103,3	MCF-7	breast:
5	chr15:71543905..71545811-chr15:72039685..72042619,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11858936	0.85[ASN][1000 genomes]
rs12437539	0.85[ASN][1000 genomes]
rs12903601	1.00[YRI][hapmap]
rs12915432	0.85[ASN][1000 genomes]
rs1501421	0.85[ASN][1000 genomes]
rs1604334	0.82[ASN][1000 genomes]
rs16953738	0.82[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs16956124	1.00[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs16956129	1.00[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs2047685	0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs2047690	0.85[ASN][1000 genomes]
rs2047691	0.85[ASN][1000 genomes]
rs2134064	0.82[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs2899771	1.00[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs4328388	0.85[ASN][1000 genomes]
rs4365247	0.82[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs4776571	0.85[ASN][1000 genomes]
rs4776574	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4777442	0.85[ASN][1000 genomes]
rs4777444	0.85[ASN][1000 genomes]
rs4777449	0.82[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs56790826	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57091071	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57874901	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57931860	0.94[ASN][1000 genomes]
rs73430296	0.94[ASN][1000 genomes]
rs73432428	0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73432430	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8036340	0.85[ASN][1000 genomes]
rs8041263	0.85[ASN][1000 genomes]
rs872472	0.85[JPT][hapmap]
rs872475	0.85[JPT][hapmap]
rs972708	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv904335	chr15:72018469-72064719	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72017000-72048800	Weak transcription	Placenta	Placenta
2	chr15:72021600-72071400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:72024600-72045600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:72030400-72075800	Weak transcription	Right Ventricle	heart
5	chr15:72031200-72048200	Weak transcription	Left Ventricle	heart
6	chr15:72036400-72044800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr15:72036400-72045200	Weak transcription	Fetal Heart	heart
8	chr15:72036400-72071400	Weak transcription	Fetal Lung	lung
9	chr15:72037000-72043800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:72037200-72043400	Strong transcription	Fetal Stomach	stomach
11	chr15:72037600-72043200	Strong transcription	Fetal Muscle Leg	muscle
12	chr15:72038800-72043400	Strong transcription	Fetal Muscle Trunk	muscle
13	chr15:72039000-72043400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:72039400-72042000	Strong transcription	Stomach Smooth Muscle	stomach
15	chr15:72039400-72050200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:72040400-72044600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:72040400-72044600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:72040600-72054200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr15:72040800-72043200	Strong transcription	Esophagus	oesophagus
20	chr15:72040800-72043400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:72040800-72043400	Strong transcription	Fetal Intestine Small	intestine
22	chr15:72040800-72044400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:72040800-72044800	Weak transcription	Duodenum Mucosa	Duodenum
24	chr15:72041000-72042000	Strong transcription	Fetal Intestine Large	intestine
25	chr15:72041000-72042800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:72041000-72042800	Weak transcription	NHDF-Ad	bronchial
27	chr15:72041000-72043400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:72041000-72043400	Strong transcription	NHEK	skin
29	chr15:72041000-72045000	Weak transcription	Pancreas	Pancrea
30	chr15:72041000-72045800	Weak transcription	Aorta	Aorta
31	chr15:72041000-72050200	Weak transcription	Lung	lung
32	chr15:72041200-72043400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr15:72041200-72044400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr15:72041400-72043200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:72041400-72044200	Weak transcription	Osteobl	bone
36	chr15:72041400-72044400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr15:72041400-72044400	Weak transcription	HSMM	muscle
38	chr15:72041400-72044400	Weak transcription	HSMMtube	muscle
39	chr15:72041400-72044800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr15:72041400-72045200	Strong transcription	Liver	Liver
41	chr15:72041400-72050200	Weak transcription	Colonic Mucosa	Colon
42	chr15:72041400-72054200	Weak transcription	Gastric	stomach
43	chr15:72041600-72043000	Genic enhancers	A549	lung
44	chr15:72041600-72044200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr15:72041600-72044400	Weak transcription	NH-A	brain
46	chr15:72041600-72045000	Weak transcription	Fetal Kidney	kidney
47	chr15:72041800-72042800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr15:72041800-72044200	Weak transcription	HUVEC	blood vessel
49	chr15:72041800-72044400	Weak transcription	NHLF	lung
50	chr15:72041800-72044600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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