Variant report

Variant	rs57874901
Chromosome Location	chr15:72040374-72040375
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72039979..72042756-chr15:72042762..72047195,4	MCF-7	breast:
2	chr15:72040056..72042121-chr15:72044649..72046510,3	MCF-7	breast:
3	chr15:72036167..72038403-chr15:72039490..72042103,3	MCF-7	breast:
4	chr15:71543905..71545811-chr15:72039685..72042619,2	MCF-7	breast:
5	chr15:72037094..72041043-chr15:72082169..72084915,5	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11072321	1.00[EUR][1000 genomes]
rs1392988	1.00[EUR][1000 genomes]
rs1501420	1.00[EUR][1000 genomes]
rs1604334	1.00[EUR][1000 genomes]
rs16956124	0.88[ASN][1000 genomes]
rs16956129	0.88[ASN][1000 genomes]
rs16956157	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16956188	1.00[EUR][1000 genomes]
rs2134064	1.00[EUR][1000 genomes]
rs2254976	1.00[EUR][1000 genomes]
rs2625531	1.00[EUR][1000 genomes]
rs2723338	1.00[EUR][1000 genomes]
rs2742321	1.00[EUR][1000 genomes]
rs28663101	1.00[EUR][1000 genomes]
rs2899771	0.88[ASN][1000 genomes]
rs4404024	1.00[EUR][1000 genomes]
rs4776574	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56790826	0.90[ASN][1000 genomes]
rs57091071	0.90[ASN][1000 genomes]
rs57931860	0.88[ASN][1000 genomes]
rs73430241	1.00[EUR][1000 genomes]
rs73430260	1.00[EUR][1000 genomes]
rs73430266	1.00[EUR][1000 genomes]
rs73430269	1.00[EUR][1000 genomes]
rs73430296	0.88[ASN][1000 genomes]
rs73432419	1.00[EUR][1000 genomes]
rs73432428	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73432430	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73445792	1.00[EUR][1000 genomes]
rs8027671	1.00[EUR][1000 genomes]
rs8033900	1.00[EUR][1000 genomes]
rs8034979	1.00[EUR][1000 genomes]
rs872472	1.00[EUR][1000 genomes]
rs905074	1.00[EUR][1000 genomes]
rs972708	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv904335	chr15:72018469-72064719	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72017000-72048800	Weak transcription	Placenta	Placenta
2	chr15:72021600-72071400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:72024600-72045600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:72027600-72040600	Weak transcription	Aorta	Aorta
5	chr15:72030400-72075800	Weak transcription	Right Ventricle	heart
6	chr15:72031200-72048200	Weak transcription	Left Ventricle	heart
7	chr15:72036400-72044800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr15:72036400-72045200	Weak transcription	Fetal Heart	heart
9	chr15:72036400-72071400	Weak transcription	Fetal Lung	lung
10	chr15:72037000-72043800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:72037200-72043400	Strong transcription	Fetal Stomach	stomach
12	chr15:72037600-72041400	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr15:72037600-72043200	Strong transcription	Fetal Muscle Leg	muscle
14	chr15:72038000-72041200	Enhancers	HepG2	liver
15	chr15:72038800-72043400	Strong transcription	Fetal Muscle Trunk	muscle
16	chr15:72039000-72041000	Enhancers	Pancreas	Pancrea
17	chr15:72039000-72041800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:72039000-72043400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:72039200-72040400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:72039200-72040400	Enhancers	Liver	Liver
21	chr15:72039200-72040400	Enhancers	HSMM	muscle
22	chr15:72039200-72040800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:72039200-72040800	Genic enhancers	Fetal Intestine Small	intestine
24	chr15:72039200-72041000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:72039200-72041000	Enhancers	NHDF-Ad	bronchial
26	chr15:72039200-72041000	Genic enhancers	NHEK	skin
27	chr15:72039200-72041200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:72039200-72041400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:72039200-72041800	Enhancers	HMEC	breast
30	chr15:72039400-72040600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:72039400-72040600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr15:72039400-72040600	Weak transcription	Gastric	stomach
33	chr15:72039400-72040800	Flanking Active TSS	Hela-S3	cervix
34	chr15:72039400-72041200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:72039400-72041800	Enhancers	HUVEC	blood vessel
36	chr15:72039400-72042000	Strong transcription	Stomach Smooth Muscle	stomach
37	chr15:72039400-72050200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr15:72039600-72040600	Enhancers	Stomach Mucosa	stomach
39	chr15:72039600-72040800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr15:72039600-72040800	Enhancers	Duodenum Mucosa	Duodenum
41	chr15:72039800-72040400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:72039800-72040400	Genic enhancers	Fetal Kidney	kidney
43	chr15:72039800-72040600	Enhancers	NHLF	lung
44	chr15:72040000-72041000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:72040000-72041400	Enhancers	Colonic Mucosa	Colon
46	chr15:72040200-72040600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
47	chr15:72040200-72040800	Genic enhancers	Esophagus	oesophagus
48	chr15:72040200-72040800	Enhancers	Small Intestine	intestine
49	chr15:72040200-72041000	Genic enhancers	Fetal Intestine Large	intestine
50	chr15:72040200-72041000	Enhancers	Lung	lung

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