Variant report

Variant	rs1392988
Chromosome Location	chr15:71937758-71937759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11072321	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1501420	1.00[EUR][1000 genomes]
rs1604334	1.00[EUR][1000 genomes]
rs16956188	1.00[EUR][1000 genomes]
rs2134064	1.00[EUR][1000 genomes]
rs2625531	1.00[EUR][1000 genomes]
rs2723338	1.00[EUR][1000 genomes]
rs2742321	1.00[EUR][1000 genomes]
rs28663101	1.00[EUR][1000 genomes]
rs4404024	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4776567	0.84[AFR][1000 genomes]
rs57874901	1.00[EUR][1000 genomes]
rs73430241	1.00[EUR][1000 genomes]
rs73430260	1.00[EUR][1000 genomes]
rs73430266	1.00[EUR][1000 genomes]
rs73430269	1.00[EUR][1000 genomes]
rs73432419	1.00[EUR][1000 genomes]
rs73445792	1.00[EUR][1000 genomes]
rs8027671	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8033900	1.00[EUR][1000 genomes]
rs8034979	1.00[EUR][1000 genomes]
rs872472	1.00[EUR][1000 genomes]
rs905074	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv833050	chr15:71848619-71980892	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:71907400-71939600	Weak transcription	Aorta	Aorta
2	chr15:71923200-71943600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr15:71924000-71941800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:71927400-71942200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:71927400-71943000	Weak transcription	Left Ventricle	heart
6	chr15:71927400-71945400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr15:71927800-71939400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:71928400-71942000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:71934000-71946800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:71936200-71940200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:71937200-71937800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
12	chr15:71937200-71944200	Weak transcription	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links