Variant report

Variant	rs11072321
Chromosome Location	chr15:71968337-71968338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1392988	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1501420	1.00[EUR][1000 genomes]
rs1604334	1.00[EUR][1000 genomes]
rs16956188	1.00[EUR][1000 genomes]
rs2134064	1.00[EUR][1000 genomes]
rs2254976	1.00[EUR][1000 genomes]
rs2625531	1.00[EUR][1000 genomes]
rs2723338	1.00[EUR][1000 genomes]
rs2742321	1.00[EUR][1000 genomes]
rs28663101	1.00[EUR][1000 genomes]
rs4404024	1.00[ASW][hapmap];0.91[LWK][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4776567	1.00[ASW][hapmap];0.93[LWK][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes]
rs57874901	1.00[EUR][1000 genomes]
rs73430241	1.00[EUR][1000 genomes]
rs73430260	1.00[EUR][1000 genomes]
rs73430266	1.00[EUR][1000 genomes]
rs73430269	1.00[EUR][1000 genomes]
rs73432419	1.00[EUR][1000 genomes]
rs73445792	1.00[EUR][1000 genomes]
rs8027671	1.00[ASW][hapmap];0.90[LWK][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8033900	1.00[EUR][1000 genomes]
rs8034979	1.00[EUR][1000 genomes]
rs872472	1.00[EUR][1000 genomes]
rs905074	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv833050	chr15:71848619-71980892	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:71951400-71971600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:71951800-71968800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr15:71954600-71969600	Weak transcription	Pancreas	Pancrea
4	chr15:71961200-71969400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:71961200-71969400	Weak transcription	Aorta	Aorta
6	chr15:71961200-71970200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:71963800-71969400	Weak transcription	NHLF	lung
8	chr15:71964800-71969000	Weak transcription	Hela-S3	cervix
9	chr15:71966400-71968400	Enhancers	Left Ventricle	heart
10	chr15:71966400-71971000	Enhancers	Colon Smooth Muscle	Colon
11	chr15:71966400-71973200	Enhancers	Fetal Heart	heart
12	chr15:71966800-71968400	Enhancers	Right Ventricle	heart
13	chr15:71966800-71972000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr15:71967000-71969400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:71967200-71969400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:71967200-71976000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:71967200-71984000	Weak transcription	Lung	lung
18	chr15:71967400-71968400	Enhancers	Rectal Smooth Muscle	rectum
19	chr15:71967600-71968400	Enhancers	Esophagus	oesophagus
20	chr15:71967800-71968400	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr15:71967800-71968400	Active TSS	Spleen	Spleen
22	chr15:71967800-71969400	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr15:71967800-71969400	Enhancers	NHEK	skin
24	chr15:71967800-71970000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:71968000-71969000	Weak transcription	GM12878-XiMat	blood
26	chr15:71968000-71969200	Weak transcription	Fetal Stomach	stomach
27	chr15:71968000-71969400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr15:71968000-71969400	Weak transcription	Right Atrium	heart
29	chr15:71968000-71969600	Weak transcription	Fetal Lung	lung
30	chr15:71968000-71969800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:71968000-71973400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr15:71968200-71968400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr15:71968200-71969000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr15:71968200-71969400	Weak transcription	Stomach Mucosa	stomach
35	chr15:71968200-71970000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:71968200-71970400	Enhancers	HMEC	breast

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