Variant report

Variant	rs8033900
Chromosome Location	chr15:72038676-72038677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72033554..72035831-chr15:72037556..72039339,2	MCF-7	breast:
2	chr15:72037094..72041043-chr15:72082169..72084915,5	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11072321	1.00[EUR][1000 genomes]
rs1392988	1.00[EUR][1000 genomes]
rs1501420	1.00[EUR][1000 genomes]
rs1604334	1.00[EUR][1000 genomes]
rs16956188	1.00[EUR][1000 genomes]
rs2134064	1.00[EUR][1000 genomes]
rs2254976	1.00[EUR][1000 genomes]
rs2625531	1.00[EUR][1000 genomes]
rs2723338	1.00[EUR][1000 genomes]
rs2742321	1.00[EUR][1000 genomes]
rs28663101	1.00[EUR][1000 genomes]
rs4404024	1.00[EUR][1000 genomes]
rs57874901	1.00[EUR][1000 genomes]
rs73430241	1.00[EUR][1000 genomes]
rs73430260	1.00[EUR][1000 genomes]
rs73430266	1.00[EUR][1000 genomes]
rs73430269	1.00[EUR][1000 genomes]
rs73432419	1.00[EUR][1000 genomes]
rs73445792	1.00[EUR][1000 genomes]
rs8027671	1.00[EUR][1000 genomes]
rs8034979	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs872472	1.00[EUR][1000 genomes]
rs905074	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv904335	chr15:72018469-72064719	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72017000-72048800	Weak transcription	Placenta	Placenta
2	chr15:72020200-72039000	Weak transcription	Pancreas	Pancrea
3	chr15:72021600-72071400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:72024600-72045600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:72025400-72039200	Weak transcription	Gastric	stomach
6	chr15:72026000-72039200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr15:72027600-72040600	Weak transcription	Aorta	Aorta
8	chr15:72030200-72039800	Weak transcription	Fetal Kidney	kidney
9	chr15:72030400-72075800	Weak transcription	Right Ventricle	heart
10	chr15:72031000-72039000	Weak transcription	Lung	lung
11	chr15:72031200-72039400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr15:72031200-72048200	Weak transcription	Left Ventricle	heart
13	chr15:72031800-72039200	Weak transcription	HMEC	breast
14	chr15:72032200-72039400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr15:72035400-72039000	Enhancers	A549	lung
16	chr15:72035400-72040200	Enhancers	Fetal Intestine Large	intestine
17	chr15:72035600-72038800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr15:72036400-72039200	Weak transcription	Liver	Liver
19	chr15:72036400-72044800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr15:72036400-72045200	Weak transcription	Fetal Heart	heart
21	chr15:72036400-72071400	Weak transcription	Fetal Lung	lung
22	chr15:72036800-72039200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr15:72036800-72039200	Weak transcription	Fetal Intestine Small	intestine
24	chr15:72036800-72039200	Weak transcription	HSMM	muscle
25	chr15:72037000-72043800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:72037200-72038800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:72037200-72039000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:72037200-72039200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:72037200-72039200	Strong transcription	NHEK	skin
30	chr15:72037200-72039200	Strong transcription	NHLF	lung
31	chr15:72037200-72043400	Strong transcription	Fetal Stomach	stomach
32	chr15:72037400-72039200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr15:72037400-72039600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr15:72037600-72039000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:72037600-72041400	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr15:72037600-72043200	Strong transcription	Fetal Muscle Leg	muscle
37	chr15:72038000-72039000	Weak transcription	Hela-S3	cervix
38	chr15:72038000-72039400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr15:72038000-72041200	Enhancers	HepG2	liver
40	chr15:72038200-72039000	Weak transcription	Esophagus	oesophagus
41	chr15:72038400-72039200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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