Variant report

Variant	rs28663101
Chromosome Location	chr15:72018667-72018668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11072321	1.00[EUR][1000 genomes]
rs1392988	1.00[EUR][1000 genomes]
rs1501420	1.00[EUR][1000 genomes]
rs1604334	1.00[EUR][1000 genomes]
rs16956188	1.00[EUR][1000 genomes]
rs2134064	1.00[EUR][1000 genomes]
rs2254976	1.00[EUR][1000 genomes]
rs2625531	1.00[EUR][1000 genomes]
rs2723338	1.00[EUR][1000 genomes]
rs2742321	1.00[EUR][1000 genomes]
rs4404024	1.00[EUR][1000 genomes]
rs57874901	1.00[EUR][1000 genomes]
rs7175039	1.00[AMR][1000 genomes]
rs73430241	1.00[EUR][1000 genomes]
rs73430260	1.00[EUR][1000 genomes]
rs73430266	1.00[EUR][1000 genomes]
rs73430269	1.00[EUR][1000 genomes]
rs73432419	1.00[EUR][1000 genomes]
rs73445792	1.00[EUR][1000 genomes]
rs8027671	1.00[EUR][1000 genomes]
rs8033900	1.00[EUR][1000 genomes]
rs8034979	1.00[EUR][1000 genomes]
rs872472	1.00[EUR][1000 genomes]
rs905074	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv904335	chr15:72018469-72064719	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72000800-72023400	Weak transcription	Fetal Intestine Small	intestine
2	chr15:72002400-72022600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr15:72002600-72022600	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:72005800-72024600	Weak transcription	Left Ventricle	heart
5	chr15:72009200-72030000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:72009800-72020800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:72010200-72020800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:72010200-72023400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:72017000-72018800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:72017000-72018800	Enhancers	Hela-S3	cervix
11	chr15:72017000-72048800	Weak transcription	Placenta	Placenta
12	chr15:72018000-72020400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:72018000-72021000	Weak transcription	NHEK	skin
14	chr15:72018000-72022200	Weak transcription	NHLF	lung
15	chr15:72018200-72019200	Weak transcription	Fetal Heart	heart
16	chr15:72018200-72022400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr15:72018200-72024800	Weak transcription	A549	lung
18	chr15:72018400-72020400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr15:72018400-72021000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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