Variant report

Variant	rs8027671
Chromosome Location	chr15:71940633-71940634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:71933977..71936543-chr15:71940286..71941851,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11072321	1.00[ASW][hapmap];0.90[LWK][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1392988	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1501420	1.00[EUR][1000 genomes]
rs1604334	1.00[EUR][1000 genomes]
rs16956188	1.00[EUR][1000 genomes]
rs2134064	1.00[EUR][1000 genomes]
rs2625531	1.00[EUR][1000 genomes]
rs2723338	1.00[EUR][1000 genomes]
rs2742321	1.00[EUR][1000 genomes]
rs28663101	1.00[EUR][1000 genomes]
rs4404024	1.00[ASW][hapmap];0.95[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4776567	1.00[ASW][hapmap];0.98[LWK][hapmap];0.85[MKK][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes]
rs57874901	1.00[EUR][1000 genomes]
rs73430241	1.00[EUR][1000 genomes]
rs73430260	1.00[EUR][1000 genomes]
rs73430266	1.00[EUR][1000 genomes]
rs73430269	1.00[EUR][1000 genomes]
rs73432419	1.00[EUR][1000 genomes]
rs73445792	1.00[EUR][1000 genomes]
rs8033900	1.00[EUR][1000 genomes]
rs8034979	1.00[EUR][1000 genomes]
rs872472	1.00[EUR][1000 genomes]
rs905074	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv833050	chr15:71848619-71980892	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:71923200-71943600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr15:71924000-71941800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:71927400-71942200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:71927400-71943000	Weak transcription	Left Ventricle	heart
5	chr15:71927400-71945400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:71928400-71942000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:71934000-71946800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:71937200-71944200	Weak transcription	Right Atrium	heart
9	chr15:71937800-71942200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:71939400-71954400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:71939600-71943800	Weak transcription	NHLF	lung
12	chr15:71939800-71943600	Weak transcription	Fetal Heart	heart
13	chr15:71939800-71943800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:71940200-71941400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr15:71940200-71944000	Weak transcription	Aorta	Aorta
16	chr15:71940200-71953400	Weak transcription	Stomach Mucosa	stomach
17	chr15:71940400-71940800	Enhancers	Fetal Muscle Leg	muscle
18	chr15:71940400-71941200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr15:71940400-71941200	Enhancers	H9 Cell Line	embryonic stem cell
20	chr15:71940400-71941400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr15:71940400-71941400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr15:71940400-71941400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr15:71940400-71941600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr15:71940400-71941800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:71940400-71942200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:71940400-71942400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr15:71940400-71943600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:71940400-71947000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:71940400-71951200	Weak transcription	Psoas Muscle	Psoas
30	chr15:71940600-71941200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:71940600-71941400	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr15:71940600-71952200	Weak transcription	Gastric	stomach

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