Variant report

Variant	rs4776567
Chromosome Location	chr15:71969852-71969853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:71969279..71971268-chr15:71994680..71996470,2	MCF-7	breast:
2	chr15:71882128..71883646-chr15:71968494..71971404,2	MCF-7	breast:
3	chr15:71968569..71971406-chr15:71973010..71974792,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11072321	1.00[ASW][hapmap];0.93[LWK][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes]
rs1392988	0.84[AFR][1000 genomes]
rs4404024	1.00[ASW][hapmap];0.98[LWK][hapmap];0.90[MKK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs8027671	1.00[ASW][hapmap];0.98[LWK][hapmap];0.85[MKK][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv833050	chr15:71848619-71980892	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:71951400-71971600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:71961200-71970200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:71966400-71971000	Enhancers	Colon Smooth Muscle	Colon
4	chr15:71966400-71973200	Enhancers	Fetal Heart	heart
5	chr15:71966800-71972000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:71967200-71976000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:71967200-71984000	Weak transcription	Lung	lung
8	chr15:71967800-71970000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:71968000-71973400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:71968200-71970000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:71968200-71970400	Enhancers	HMEC	breast
12	chr15:71968400-71970800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:71968400-71970800	Weak transcription	Esophagus	oesophagus
14	chr15:71968400-71971800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:71968400-71972000	Weak transcription	Spleen	Spleen
16	chr15:71969000-71970800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr15:71969000-71970800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr15:71969000-71971800	Enhancers	Hela-S3	cervix
19	chr15:71969000-71972800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr15:71969000-71972800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr15:71969200-71970000	Enhancers	Fetal Stomach	stomach
22	chr15:71969200-71970000	Enhancers	A549	lung
23	chr15:71969200-71970200	Flanking Active TSS	GM12878-XiMat	blood
24	chr15:71969200-71970800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr15:71969200-71970800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr15:71969200-71974200	Enhancers	HepG2	liver
27	chr15:71969400-71970000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr15:71969400-71970000	Enhancers	Aorta	Aorta
29	chr15:71969400-71970000	Enhancers	Brain Anterior Caudate	brain
30	chr15:71969400-71970000	Enhancers	Ovary	ovary
31	chr15:71969400-71970000	Flanking Active TSS	Rectal Smooth Muscle	rectum
32	chr15:71969400-71970000	Enhancers	HUVEC	blood vessel
33	chr15:71969400-71970000	Enhancers	NHLF	lung
34	chr15:71969400-71970200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr15:71969400-71970400	Enhancers	H1 Cell Line	embryonic stem cell
36	chr15:71969400-71970400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr15:71969400-71970400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr15:71969400-71970600	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr15:71969400-71970600	Enhancers	Gastric	stomach
40	chr15:71969400-71970600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr15:71969400-71970600	Enhancers	Right Ventricle	heart
42	chr15:71969400-71970800	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr15:71969400-71971000	Enhancers	H9 Cell Line	embryonic stem cell
44	chr15:71969400-71971200	Enhancers	Psoas Muscle	Psoas
45	chr15:71969400-71972200	Enhancers	Fetal Muscle Leg	muscle
46	chr15:71969400-71972800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr15:71969400-71973800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:71969400-71974000	Enhancers	Stomach Mucosa	stomach
49	chr15:71969600-71970400	Enhancers	Fetal Lung	lung
50	chr15:71969600-71970600	Enhancers	Adipose Nuclei	Adipose

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