Variant report

Variant	rs4404024
Chromosome Location	chr15:71947270-71947271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:71946236..71948650-chr15:71950323..71953408,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187720	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11072321	1.00[ASW][hapmap];0.91[LWK][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1392988	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1501420	1.00[EUR][1000 genomes]
rs1604334	1.00[EUR][1000 genomes]
rs16956188	1.00[EUR][1000 genomes]
rs2134064	1.00[EUR][1000 genomes]
rs2254976	1.00[EUR][1000 genomes]
rs2625531	1.00[EUR][1000 genomes]
rs2723338	1.00[EUR][1000 genomes]
rs2742321	1.00[EUR][1000 genomes]
rs28663101	1.00[EUR][1000 genomes]
rs4776567	1.00[ASW][hapmap];0.98[LWK][hapmap];0.90[MKK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes]
rs57874901	1.00[EUR][1000 genomes]
rs73430241	1.00[EUR][1000 genomes]
rs73430260	1.00[EUR][1000 genomes]
rs73430266	1.00[EUR][1000 genomes]
rs73430269	1.00[EUR][1000 genomes]
rs73432419	1.00[EUR][1000 genomes]
rs73445792	1.00[EUR][1000 genomes]
rs8027671	1.00[ASW][hapmap];0.95[LWK][hapmap];0.96[MKK][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8033900	1.00[EUR][1000 genomes]
rs8034979	1.00[EUR][1000 genomes]
rs872472	1.00[EUR][1000 genomes]
rs905074	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv833050	chr15:71848619-71980892	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:71939400-71954400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:71940200-71953400	Weak transcription	Stomach Mucosa	stomach
3	chr15:71940400-71951200	Weak transcription	Psoas Muscle	Psoas
4	chr15:71940600-71952200	Weak transcription	Gastric	stomach
5	chr15:71942800-71949400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:71942800-71949600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:71943800-71948000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:71944000-71956000	Enhancers	HepG2	liver
9	chr15:71944600-71948000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:71944600-71949400	Weak transcription	Esophagus	oesophagus
11	chr15:71944600-71951600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:71944600-71952000	Weak transcription	Aorta	Aorta
13	chr15:71945200-71955000	Enhancers	Liver	Liver
14	chr15:71945600-71949400	Weak transcription	Right Ventricle	heart
15	chr15:71945800-71952000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr15:71946400-71947400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:71946400-71947400	Enhancers	Adipose Nuclei	Adipose
18	chr15:71946400-71948200	Enhancers	HUVEC	blood vessel
19	chr15:71946400-71949400	Weak transcription	Left Ventricle	heart
20	chr15:71946600-71947400	Enhancers	Fetal Lung	lung
21	chr15:71946600-71953600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr15:71946800-71947400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr15:71946800-71947800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr15:71947000-71947400	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr15:71947000-71947400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:71947000-71947400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr15:71947000-71947400	Enhancers	Fetal Muscle Leg	muscle
28	chr15:71947000-71947600	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr15:71947000-71947600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:71947000-71947600	Enhancers	Fetal Heart	heart
31	chr15:71947000-71947600	Enhancers	NHEK	skin
32	chr15:71947000-71960600	Weak transcription	Fetal Intestine Small	intestine
33	chr15:71947200-71947600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr15:71947200-71947600	Enhancers	HMEC	breast

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