Variant report

Variant	rs4776571
Chromosome Location	chr15:72006805-72006806
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11858936	1.00[ASN][1000 genomes]
rs12437539	1.00[ASN][1000 genomes]
rs12915432	1.00[ASN][1000 genomes]
rs1501421	1.00[ASN][1000 genomes]
rs1604334	0.97[ASN][1000 genomes]
rs16953738	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16956124	0.91[ASN][1000 genomes]
rs16956129	0.91[ASN][1000 genomes]
rs16956157	0.85[ASN][1000 genomes]
rs2047685	1.00[ASN][1000 genomes]
rs2047690	1.00[ASN][1000 genomes]
rs2047691	1.00[ASN][1000 genomes]
rs2134064	0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2899771	0.91[ASN][1000 genomes]
rs4328388	1.00[ASN][1000 genomes]
rs4365247	1.00[ASN][1000 genomes]
rs4777442	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4777444	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4777449	1.00[ASN][1000 genomes]
rs56790826	0.88[ASN][1000 genomes]
rs57091071	0.88[ASN][1000 genomes]
rs57931860	0.91[ASN][1000 genomes]
rs73430296	0.91[ASN][1000 genomes]
rs8036340	1.00[ASN][1000 genomes]
rs8041263	1.00[ASN][1000 genomes]
rs872472	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs872475	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs972708	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:71998000-72009000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:71998000-72009200	Weak transcription	NHEK	skin
3	chr15:72000800-72023400	Weak transcription	Fetal Intestine Small	intestine
4	chr15:72001400-72009000	Weak transcription	Lung	lung
5	chr15:72001400-72009400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr15:72002000-72008200	Weak transcription	Adipose Nuclei	Adipose
7	chr15:72002400-72008800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:72002400-72022600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr15:72002600-72008800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:72002600-72022600	Weak transcription	Fetal Muscle Leg	muscle
11	chr15:72003000-72008400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr15:72003000-72008400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:72003000-72008400	Weak transcription	NHLF	lung
14	chr15:72003200-72008600	Weak transcription	Hela-S3	cervix
15	chr15:72003200-72018000	Weak transcription	Ovary	ovary
16	chr15:72005800-72009400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:72005800-72024600	Weak transcription	Left Ventricle	heart
18	chr15:72006000-72008600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:72006800-72007600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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