Variant report

Variant	rs2899774
Chromosome Location	chr15:72206808-72206809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72197435..72199145-chr15:72206196..72207927,2	K562	blood:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs11072341	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11072343	0.86[EUR][1000 genomes]
rs1120002	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11856068	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12437582	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12438532	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs12439689	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12439773	0.91[EUR][1000 genomes]
rs12440299	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12441470	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12441567	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12441622	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12443127	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12592806	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12593857	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12593946	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1471688	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1545825	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16953747	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16956539	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1805020	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1805021	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1871834	1.00[ASW][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1905337	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1979459	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2277544	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2291279	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2306575	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2415124	0.84[AFR][1000 genomes]
rs2415125	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2415129	1.00[ASW][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2415131	1.00[ASW][hapmap];0.85[MKK][hapmap]
rs2625526	0.83[ASN][1000 genomes]
rs2723357	0.83[AFR][1000 genomes]
rs2742321	0.81[AFR][1000 genomes]
rs28639924	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28653163	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28658271	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28701834	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2929514	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2929515	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2929521	0.88[ASN][1000 genomes]
rs2929522	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2929524	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2929530	1.00[ASW][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2929531	1.00[ASW][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2929533	0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957369	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2957726	0.86[ASN][1000 genomes]
rs2957729	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2957730	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2957733	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2957741	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2957747	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2957748	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2957749	1.00[ASW][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34625473	0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs35696756	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35773391	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3759812	0.86[EUR][1000 genomes]
rs3825869	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4511484	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4776583	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4777472	0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6494976	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7162134	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7164646	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7172281	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8032957	1.00[ASW][hapmap];0.90[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8033997	0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8034436	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8034722	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8039245	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs8182066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs981695	0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9920148	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv569906	chr15:72126034-72218036	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv516871	chr15:72126034-72325595	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv904336	chr15:72145937-72329906	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv569907	chr15:72154000-72215065	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv569908	chr15:72154000-72218036	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv457195	chr15:72177659-72250741	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv569909	chr15:72177659-72250741	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
13	nsv457197	chr15:72203517-72296328	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv569910	chr15:72203517-72296328	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv569911	chr15:72203517-72305982	Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv457198	chr15:72203517-72325595	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv569912	chr15:72203517-72325595	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72144600-72223400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr15:72161000-72211000	Weak transcription	Small Intestine	intestine
3	chr15:72164000-72218400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:72191000-72222800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr15:72191200-72229600	Weak transcription	HUVEC	blood vessel
6	chr15:72191600-72208000	Weak transcription	Colon Smooth Muscle	Colon
7	chr15:72192400-72208600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr15:72192400-72216000	Weak transcription	Fetal Intestine Large	intestine
9	chr15:72192400-72218400	Weak transcription	Esophagus	oesophagus
10	chr15:72192400-72218400	Weak transcription	Lung	lung
11	chr15:72192400-72218600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:72192400-72218800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:72192400-72222800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr15:72192400-72223400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:72192400-72223400	Weak transcription	NH-A	brain
16	chr15:72192400-72223600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr15:72192400-72224000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr15:72192400-72241200	Weak transcription	Brain Angular Gyrus	brain
19	chr15:72192400-72249400	Weak transcription	NHLF	lung
20	chr15:72193800-72218400	Weak transcription	Aorta	Aorta
21	chr15:72193800-72224600	Weak transcription	Thymus	Thymus
22	chr15:72193800-72232000	Weak transcription	Fetal Heart	heart
23	chr15:72194000-72218400	Weak transcription	Pancreas	Pancrea
24	chr15:72194200-72210200	Weak transcription	Dnd41	blood
25	chr15:72194200-72218600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr15:72194200-72223400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr15:72194200-72223400	Weak transcription	HSMMtube	muscle
28	chr15:72194200-72224400	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr15:72194600-72223000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr15:72195400-72222800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:72196200-72222200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr15:72196600-72217000	Weak transcription	Fetal Stomach	stomach
33	chr15:72196600-72223000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr15:72196800-72210600	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr15:72196800-72218400	Weak transcription	Left Ventricle	heart
36	chr15:72196800-72221400	Weak transcription	Brain Germinal Matrix	brain
37	chr15:72197400-72222200	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr15:72197400-72223600	Weak transcription	Osteobl	bone
39	chr15:72199000-72211400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr15:72199000-72218400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr15:72199200-72208600	Weak transcription	NHDF-Ad	bronchial
42	chr15:72200800-72207000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:72201000-72208200	Strong transcription	Placenta	Placenta
44	chr15:72201400-72210000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr15:72201400-72210800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr15:72201600-72207000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:72202000-72221400	Weak transcription	Fetal Brain Male	brain
48	chr15:72204200-72221800	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr15:72204600-72210400	Weak transcription	Brain Substantia Nigra	brain
50	chr15:72205600-72207000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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