Variant report

Variant	rs1805021
Chromosome Location	chr15:72104433-72104434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs11072341	0.86[EUR][1000 genomes]
rs11856068	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12437582	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12439773	0.95[EUR][1000 genomes]
rs12441470	0.90[EUR][1000 genomes]
rs12441567	0.90[EUR][1000 genomes]
rs12441622	0.90[EUR][1000 genomes]
rs12443127	0.90[EUR][1000 genomes]
rs12592806	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1471688	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1545825	0.86[EUR][1000 genomes]
rs16953747	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1805020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1871834	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1905337	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1979459	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2277544	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2291279	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2306575	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2415125	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2415129	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2625526	0.90[ASN][1000 genomes]
rs2742318	0.83[ASN][1000 genomes]
rs28658271	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2899774	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2929514	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2929515	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2929522	0.86[EUR][1000 genomes]
rs2929530	0.86[EUR][1000 genomes]
rs2929531	0.86[EUR][1000 genomes]
rs2929533	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2957369	0.86[EUR][1000 genomes]
rs2957729	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2957730	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2957733	0.86[EUR][1000 genomes]
rs2957741	0.86[EUR][1000 genomes]
rs2957747	0.90[EUR][1000 genomes]
rs2957749	0.90[EUR][1000 genomes]
rs35696756	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3759812	0.90[EUR][1000 genomes]
rs3825869	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4511484	0.86[EUR][1000 genomes]
rs4776583	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4777472	0.85[ASN][1000 genomes]
rs6494976	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7162134	0.82[ASN][1000 genomes]
rs8032957	0.86[EUR][1000 genomes]
rs8033997	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8034436	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8034722	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8182066	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs981695	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv827383	chr15:72100044-72107239	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72096000-72105600	Enhancers	Fetal Muscle Leg	muscle
2	chr15:72100400-72112000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr15:72100600-72104800	Weak transcription	Lung	lung
4	chr15:72100600-72111000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr15:72100600-72113800	Weak transcription	Fetal Lung	lung
6	chr15:72100800-72104800	Weak transcription	HSMMtube	muscle
7	chr15:72100800-72111400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:72101200-72105000	Weak transcription	Right Ventricle	heart
9	chr15:72101200-72112600	Weak transcription	Right Atrium	heart
10	chr15:72102200-72105200	Weak transcription	Fetal Heart	heart
11	chr15:72103000-72107400	Weak transcription	Fetal Brain Female	brain
12	chr15:72103200-72105000	Enhancers	Fetal Muscle Trunk	muscle
13	chr15:72103400-72114000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:72103800-72104600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:72104000-72105000	ZNF genes & repeats	Spleen	Spleen
16	chr15:72104000-72105800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:72104000-72106800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:72104200-72105200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:72104400-72104600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr15:72104400-72104600	Enhancers	Placenta	Placenta

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