Variant report

Variant	rs8034722
Chromosome Location	chr15:72186639-72186640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs11072341	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11072343	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1120002	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11856068	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12437582	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12438532	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12439689	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12439773	0.86[EUR][1000 genomes]
rs12440299	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12441470	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12441567	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12441622	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12443127	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12592806	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12593857	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12593946	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1471688	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1545825	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16953747	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16956539	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1805020	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1805021	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1871834	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1905337	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1979459	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2277544	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2291279	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2306575	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415124	0.89[AFR][1000 genomes]
rs2415125	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2415129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2625526	0.85[ASN][1000 genomes]
rs2723357	0.87[AFR][1000 genomes]
rs2742321	0.85[AFR][1000 genomes]
rs28639924	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28653163	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28658271	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28701834	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2899774	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2929514	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2929515	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2929521	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2929522	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2929524	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2929530	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2929531	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2929533	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2957369	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2957726	0.87[ASN][1000 genomes]
rs2957729	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2957730	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2957733	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2957741	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2957747	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2957748	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2957749	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34625473	0.80[ASN][1000 genomes]
rs35696756	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35773391	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3759812	0.81[EUR][1000 genomes]
rs3825869	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4511484	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4776583	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4777472	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6494976	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7162134	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7164646	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7172281	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8032957	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8033997	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8034436	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8039245	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8182066	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs981695	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9920148	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv569906	chr15:72126034-72218036	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv516871	chr15:72126034-72325595	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
8	nsv904336	chr15:72145937-72329906	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv569907	chr15:72154000-72215065	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv569908	chr15:72154000-72218036	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv457195	chr15:72177659-72250741	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv569909	chr15:72177659-72250741	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72114600-72190600	Weak transcription	Pancreas	Pancrea
2	chr15:72122200-72189400	Weak transcription	Right Ventricle	heart
3	chr15:72122400-72195000	Weak transcription	NHEK	skin
4	chr15:72122600-72195800	Weak transcription	Gastric	stomach
5	chr15:72131800-72192800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:72142600-72189600	Weak transcription	NHLF	lung
7	chr15:72142600-72199200	Weak transcription	Hela-S3	cervix
8	chr15:72142800-72190200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:72143000-72190600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:72143000-72190600	Weak transcription	Colonic Mucosa	Colon
11	chr15:72144600-72223400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr15:72145400-72190600	Weak transcription	Spleen	Spleen
13	chr15:72153200-72189600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr15:72161000-72211000	Weak transcription	Small Intestine	intestine
15	chr15:72162600-72187600	Strong transcription	Placenta	Placenta
16	chr15:72164000-72190600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr15:72164000-72190600	Weak transcription	Aorta	Aorta
18	chr15:72164000-72218400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr15:72165400-72190800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr15:72167000-72197800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:72168800-72190800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:72170200-72194000	Weak transcription	Fetal Intestine Small	intestine
23	chr15:72171200-72192600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr15:72172400-72192000	Weak transcription	Thymus	Thymus
25	chr15:72172600-72190200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:72172800-72190000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr15:72172800-72190800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr15:72172800-72190800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr15:72173000-72190000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr15:72173000-72200600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr15:72173200-72190000	Weak transcription	HUVEC	blood vessel
32	chr15:72173200-72190600	Weak transcription	Dnd41	blood
33	chr15:72174800-72189800	Weak transcription	Fetal Brain Male	brain
34	chr15:72175600-72190200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:72175600-72190200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr15:72176000-72189600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr15:72176000-72189800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr15:72176000-72190000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:72176000-72193400	Weak transcription	Psoas Muscle	Psoas
40	chr15:72177400-72192400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:72178200-72189400	Weak transcription	Ovary	ovary
42	chr15:72178200-72193800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr15:72178400-72195000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr15:72178800-72189800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:72178800-72190600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr15:72178800-72195000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr15:72179000-72190200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr15:72179000-72190400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr15:72180000-72189400	Weak transcription	Fetal Kidney	kidney
50	chr15:72180200-72189600	Weak transcription	Colon Smooth Muscle	Colon

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