Variant report

Variant	rs28653163
Chromosome Location	chr15:72366913-72366914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs11072341	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072343	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11072344	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1120002	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11856068	0.86[EUR][1000 genomes]
rs12437582	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12438532	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12439689	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12440204	0.88[ASN][1000 genomes]
rs12440299	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12441246	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12441470	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441567	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441622	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442680	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12443127	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12592615	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12592806	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12592858	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12592932	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12592969	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12593082	0.88[ASN][1000 genomes]
rs12593857	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593946	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1471688	0.86[EUR][1000 genomes]
rs1545825	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16953747	0.86[EUR][1000 genomes]
rs16953770	0.86[ASN][1000 genomes]
rs16956539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16956599	0.88[ASN][1000 genomes]
rs16956602	0.90[ASN][1000 genomes]
rs1871834	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1905337	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1979459	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2277544	0.91[EUR][1000 genomes]
rs2291279	0.95[EUR][1000 genomes]
rs2305705	0.90[ASN][1000 genomes]
rs2306575	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2415125	0.82[ASN][1000 genomes]
rs2415129	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28397923	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28412868	0.86[AFR][1000 genomes]
rs28452511	0.81[AFR][1000 genomes]
rs28455109	0.88[AFR][1000 genomes]
rs28639924	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28640231	0.86[AFR][1000 genomes]
rs28658271	0.91[EUR][1000 genomes]
rs28701834	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2899774	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2929514	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2929515	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2929521	0.96[ASN][1000 genomes]
rs2929522	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2929524	0.90[ASN][1000 genomes]
rs2929530	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2929531	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2929533	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2957369	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2957726	0.82[ASN][1000 genomes]
rs2957729	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2957730	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2957733	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957741	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2957747	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2957748	0.87[ASN][1000 genomes]
rs2957749	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34625473	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35696756	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35773391	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3759819	0.81[AFR][1000 genomes]
rs3809505	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3825869	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4511484	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4776583	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4777472	0.84[ASN][1000 genomes]
rs4777479	0.85[ASN][1000 genomes]
rs6494976	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7162134	0.84[ASN][1000 genomes]
rs7164646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7171243	0.88[AFR][1000 genomes]
rs7171446	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7172177	0.93[AFR][1000 genomes]
rs7175907	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7178613	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8029218	0.86[ASN][1000 genomes]
rs8032231	0.84[AFR][1000 genomes]
rs8032957	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8033997	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8034436	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8034722	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8039245	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8039966	0.90[AFR][1000 genomes]
rs8182066	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs981695	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9920148	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
6	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
8	esv11550	chr15:72353301-72395288	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv904337	chr15:72361942-72390515	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72351200-72395800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr15:72353600-72379600	Weak transcription	Primary T cells from cord blood	blood
3	chr15:72354000-72378400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:72354400-72374800	Weak transcription	Psoas Muscle	Psoas
5	chr15:72355800-72376200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr15:72356400-72370200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:72361600-72370800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr15:72361600-72377400	Weak transcription	Fetal Intestine Small	intestine
9	chr15:72361600-72390600	Weak transcription	Aorta	Aorta
10	chr15:72361600-72391400	Weak transcription	Ovary	ovary
11	chr15:72363600-72370200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:72366400-72367000	Enhancers	Fetal Kidney	kidney
13	chr15:72366600-72367000	Enhancers	Colon Smooth Muscle	Colon
14	chr15:72366800-72367200	Enhancers	Stomach Smooth Muscle	stomach
15	chr15:72366800-72367200	Enhancers	A549	lung

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