Variant report

Variant	rs11074027
Chromosome Location	chr15:92497617-92497618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:92396062..92396645-chr15:92497373..92497996,2	MCF-7	breast:
2	chr15:92495196..92498509-chr15:92585959..92588143,4	MCF-7	breast:
3	chr15:92482666..92484901-chr15:92495644..92498156,3	MCF-7	breast:
4	chr15:92495221..92497782-chr15:92516330..92519314,2	MCF-7	breast:
5	chr15:92495971..92498057-chr15:92512992..92515927,3	MCF-7	breast:
6	chr15:92486176..92494051-chr15:92494562..92499303,11	MCF-7	breast:
7	chr15:92496027..92498083-chr15:92616983..92618525,2	MCF-7	breast:
8	chr15:92495579..92497655-chr15:92499848..92503443,3	MCF-7	breast:
9	chr15:92488195..92489990-chr15:92496310..92499101,2	MCF-7	breast:
10	chr15:92428859..92429779-chr15:92497064..92497700,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000176463	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10454699	0.85[CEU][hapmap]
rs10852164	0.95[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs10852166	0.86[CEU][hapmap]
rs11631731	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12910715	0.90[CEU][hapmap]
rs12910862	0.86[CEU][hapmap]
rs2138849	0.84[CEU][hapmap]
rs4312282	0.84[CEU][hapmap]
rs4932592	0.86[CEU][hapmap]
rs8027160	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92489200-92499400	Enhancers	Brain Hippocampus Middle	brain
2	chr15:92490000-92498200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:92490200-92498000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr15:92491200-92499000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr15:92491600-92498000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr15:92491600-92500600	Weak transcription	Psoas Muscle	Psoas
7	chr15:92491800-92499000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:92492000-92499200	Weak transcription	Aorta	Aorta
9	chr15:92492000-92499200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr15:92492000-92499400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:92492000-92499400	Weak transcription	Brain Anterior Caudate	brain
12	chr15:92492200-92499000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:92492200-92499000	Weak transcription	Osteobl	bone
14	chr15:92492400-92498000	Weak transcription	Ovary	ovary
15	chr15:92492400-92499000	Enhancers	NHEK	skin
16	chr15:92492400-92499400	Weak transcription	NHLF	lung
17	chr15:92493000-92498000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr15:92493200-92498400	Enhancers	Primary T cells fromperipheralblood	blood
19	chr15:92493200-92498400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr15:92493200-92500200	Enhancers	HMEC	breast
21	chr15:92493400-92498400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:92493800-92498200	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr15:92493800-92499000	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr15:92493800-92499200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:92493800-92499200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr15:92494000-92498200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:92494000-92499200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr15:92494000-92499400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr15:92494400-92499000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr15:92494400-92499000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr15:92494600-92497800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:92494600-92499000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr15:92494600-92499000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr15:92494600-92499000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:92494600-92499200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr15:92494600-92499400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr15:92494800-92499000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr15:92495000-92498600	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr15:92495000-92498600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr15:92495200-92498400	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr15:92495400-92497800	Enhancers	Brain Angular Gyrus	brain
42	chr15:92495400-92505400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr15:92495600-92499200	Enhancers	Stomach Mucosa	stomach
44	chr15:92495600-92499400	Enhancers	Hela-S3	cervix
45	chr15:92495600-92499600	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr15:92496000-92498200	Enhancers	Pancreas	Pancrea
47	chr15:92496000-92498200	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr15:92496000-92498800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:92496000-92499000	Enhancers	Spleen	Spleen
50	chr15:92496000-92499200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links