Variant report

Variant	rs4932592
Chromosome Location	chr15:92518711-92518712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92515850..92520116-chr15:92521478..92524897,5	MCF-7	breast:
2	chr15:92495221..92497782-chr15:92516330..92519314,2	MCF-7	breast:
3	chr15:92518566..92519642-chr15:92620200..92621254,3	MCF-7	breast:
4	chr15:92509487..92513090-chr15:92516971..92519490,3	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10454699	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10852165	0.95[CHB][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10852166	0.95[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11074027	0.86[CEU][hapmap]
rs11635055	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12439818	1.00[YRI][hapmap]
rs12439826	0.98[ASN][1000 genomes]
rs12441537	1.00[YRI][hapmap]
rs12901238	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12902685	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12903803	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12905744	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12909480	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12910715	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12910862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12916491	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1356417	0.95[ASN][1000 genomes]
rs1400783	0.95[ASN][1000 genomes]
rs1568210	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16946157	0.82[ASN][1000 genomes]
rs16946164	0.82[ASN][1000 genomes]
rs16946168	0.95[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs17644254	1.00[YRI][hapmap]
rs17695404	1.00[YRI][hapmap]
rs2138849	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2176452	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs28470895	0.82[ASN][1000 genomes]
rs28513490	0.93[EUR][1000 genomes]
rs28752332	0.89[EUR][1000 genomes]
rs35973922	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4312282	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4932593	1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs4984325	1.00[YRI][hapmap]
rs62009549	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7165760	0.95[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs7171131	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes]
rs7171921	0.95[ASN][1000 genomes]
rs7172099	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7172159	0.86[CHB][hapmap];0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs7178673	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7178734	0.94[ASN][1000 genomes]
rs7179815	0.95[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs8025507	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8025658	1.00[YRI][hapmap]
rs8027160	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.89[EUR][1000 genomes]
rs8040046	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs953888	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs976216	0.95[ASN][1000 genomes]
rs9920069	0.95[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92498200-92555000	Weak transcription	Gastric	stomach
2	chr15:92509600-92519200	Enhancers	Brain Hippocampus Middle	brain
3	chr15:92514000-92523200	Weak transcription	Aorta	Aorta
4	chr15:92515400-92519800	Enhancers	Left Ventricle	heart
5	chr15:92515600-92519200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:92515800-92519200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr15:92515800-92519200	Enhancers	Brain Cingulate Gyrus	brain
8	chr15:92516000-92521200	Enhancers	Right Atrium	heart
9	chr15:92516200-92519000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:92516200-92519200	Enhancers	Fetal Heart	heart
11	chr15:92516200-92519200	Enhancers	Right Ventricle	heart
12	chr15:92516400-92519200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:92516400-92519200	Enhancers	Brain Substantia Nigra	brain
14	chr15:92516400-92519200	Enhancers	Lung	lung
15	chr15:92516400-92519200	Enhancers	HMEC	breast
16	chr15:92516600-92518800	Enhancers	Ovary	ovary
17	chr15:92516600-92518800	Enhancers	A549	lung
18	chr15:92516600-92519000	Enhancers	Brain Angular Gyrus	brain
19	chr15:92516600-92519200	Enhancers	Brain Anterior Caudate	brain
20	chr15:92516600-92519200	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr15:92516800-92519000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:92516800-92519000	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr15:92516800-92519200	Enhancers	Esophagus	oesophagus
24	chr15:92517000-92519000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr15:92517400-92519000	Enhancers	NHEK	skin
26	chr15:92517600-92518800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:92517600-92518800	Enhancers	Fetal Brain Male	brain
28	chr15:92517600-92519000	Enhancers	Pancreas	Pancrea
29	chr15:92518000-92518800	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr15:92518000-92518800	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr15:92518000-92519000	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr15:92518000-92519200	Enhancers	Fetal Muscle Leg	muscle
33	chr15:92518000-92524400	Weak transcription	Spleen	Spleen
34	chr15:92518200-92518800	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr15:92518200-92518800	Enhancers	Hela-S3	cervix
36	chr15:92518200-92519000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:92518200-92526000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr15:92518400-92518800	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr15:92518400-92519000	Enhancers	HSMMtube	muscle
40	chr15:92518400-92519200	Enhancers	Fetal Muscle Trunk	muscle
41	chr15:92518400-92519200	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr15:92518600-92519200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:92518600-92519200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
44	chr15:92518600-92519200	Enhancers	Psoas Muscle	Psoas

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