Variant report

Variant	rs11635055
Chromosome Location	chr15:92527132-92527133
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92189456..92191502-chr15:92524518..92527430,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10454699	0.80[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10852165	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs10852166	0.81[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs12439818	1.00[YRI][hapmap]
rs12439826	0.96[ASN][1000 genomes]
rs12441537	1.00[YRI][hapmap]
rs12901238	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12902685	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12903803	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12905744	0.95[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs12909480	0.90[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12910715	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12910862	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12916491	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1356417	0.90[ASN][1000 genomes]
rs1400783	0.93[ASN][1000 genomes]
rs1568210	0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs16946168	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs17644254	1.00[YRI][hapmap]
rs17695404	1.00[YRI][hapmap]
rs2138849	0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2176452	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs35973922	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4312282	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4932592	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4932593	0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes]
rs4984325	1.00[YRI][hapmap]
rs62009549	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7165760	0.91[CHB][hapmap];0.83[JPT][hapmap]
rs7171131	0.81[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap]
rs7171921	0.93[ASN][1000 genomes]
rs7172099	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs7172159	0.81[CHB][hapmap]
rs7178673	0.80[ASN][1000 genomes]
rs7178734	0.89[ASN][1000 genomes]
rs7179815	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs8025658	1.00[YRI][hapmap]
rs8027160	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs8040046	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs953888	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs976216	0.90[ASN][1000 genomes]
rs9920069	0.91[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92498200-92555000	Weak transcription	Gastric	stomach
2	chr15:92519000-92529000	Weak transcription	Brain Angular Gyrus	brain
3	chr15:92523800-92527400	Enhancers	Right Atrium	heart
4	chr15:92524000-92529200	Enhancers	Fetal Heart	heart
5	chr15:92524200-92528200	Weak transcription	Brain Anterior Caudate	brain
6	chr15:92524400-92527400	Enhancers	Spleen	Spleen
7	chr15:92524400-92528400	Weak transcription	Brain Substantia Nigra	brain
8	chr15:92524400-92533600	Weak transcription	Psoas Muscle	Psoas
9	chr15:92524600-92528400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:92524600-92528600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:92524600-92533200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr15:92524600-92534000	Weak transcription	Stomach Smooth Muscle	stomach
13	chr15:92525200-92527400	Enhancers	Ovary	ovary
14	chr15:92526200-92528600	Weak transcription	Left Ventricle	heart
15	chr15:92526200-92529000	Weak transcription	Esophagus	oesophagus
16	chr15:92526200-92529000	Weak transcription	Lung	lung
17	chr15:92526200-92533400	Weak transcription	HSMMtube	muscle
18	chr15:92526200-92544000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:92526400-92527400	Enhancers	Brain Hippocampus Middle	brain
20	chr15:92526400-92535600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:92526400-92535800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr15:92526600-92528600	Weak transcription	HMEC	breast
23	chr15:92526800-92527200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr15:92526800-92527400	Enhancers	Aorta	Aorta
25	chr15:92526800-92527600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr15:92527000-92527400	Enhancers	Right Ventricle	heart

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