Variant report

Variant	rs7171131
Chromosome Location	chr15:92504340-92504341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10454699	0.90[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10852165	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10852166	0.90[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11635055	0.81[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap]
rs12901238	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12902685	0.86[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12903803	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs12905744	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs12909480	0.81[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs12910715	0.84[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs12910862	0.90[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs1356417	0.82[ASN][1000 genomes]
rs1568210	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs16946157	0.96[ASN][1000 genomes]
rs16946164	0.96[ASN][1000 genomes]
rs16946168	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2138849	0.89[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs2176452	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs28470895	0.96[ASN][1000 genomes]
rs28513490	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28752332	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4312282	0.82[CHB][hapmap]
rs4932592	0.95[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes]
rs4932593	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs61155306	0.90[ASN][1000 genomes]
rs7165760	0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7172099	0.81[CHB][hapmap];0.86[JPT][hapmap]
rs7172159	0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs7178673	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7178734	0.81[ASN][1000 genomes]
rs7179815	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs8025507	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8027160	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8040046	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs953888	0.84[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs976216	0.82[ASN][1000 genomes]
rs9920069	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92495400-92505400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr15:92498200-92505200	Weak transcription	Colonic Mucosa	Colon
3	chr15:92498200-92555000	Weak transcription	Gastric	stomach
4	chr15:92498400-92505200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:92499000-92505200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr15:92499200-92504400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr15:92499400-92504400	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:92499600-92505800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:92499800-92504600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:92499800-92505200	Weak transcription	Esophagus	oesophagus
11	chr15:92500000-92504400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:92500000-92504400	Weak transcription	Hela-S3	cervix
13	chr15:92500000-92505000	Weak transcription	Adipose Nuclei	Adipose
14	chr15:92500000-92505800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:92500200-92504600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr15:92500200-92509600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:92500800-92504400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr15:92500800-92504600	Weak transcription	Left Ventricle	heart
19	chr15:92500800-92504600	Weak transcription	Right Atrium	heart
20	chr15:92500800-92504800	Weak transcription	Right Ventricle	heart
21	chr15:92500800-92505200	Weak transcription	Lung	lung
22	chr15:92500800-92508600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:92500800-92508800	Weak transcription	Ovary	ovary
24	chr15:92503600-92504600	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr15:92504200-92504800	Enhancers	Brain Substantia Nigra	brain
26	chr15:92504200-92505000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr15:92504200-92505000	Enhancers	A549	lung
28	chr15:92504200-92505200	Enhancers	HMEC	breast
29	chr15:92504200-92505200	Enhancers	NHEK	skin

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