Variant report

Variant	rs12910862
Chromosome Location	chr15:92525361-92525362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:92189456..92191502-chr15:92524518..92527430,2	MCF-7	breast:
2	chr15:92399066..92399852-chr15:92525323..92526129,3	MCF-7	breast:
3	chr15:92524405..92526013-chr15:92611226..92613057,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10454699	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10852165	0.95[CHB][hapmap];0.87[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10852166	0.90[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11074027	0.86[CEU][hapmap]
rs11635055	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12439826	0.99[ASN][1000 genomes]
rs12441537	1.00[YRI][hapmap]
rs12901238	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12902685	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12903803	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12905744	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12909480	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs12910715	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12916491	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1356417	0.93[ASN][1000 genomes]
rs1400783	0.95[ASN][1000 genomes]
rs1568210	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16946157	0.81[ASN][1000 genomes]
rs16946164	0.81[ASN][1000 genomes]
rs16946168	0.95[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs17644254	1.00[YRI][hapmap]
rs2138849	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2176452	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs28470895	0.81[ASN][1000 genomes]
rs28513490	0.86[EUR][1000 genomes]
rs28752332	0.82[EUR][1000 genomes]
rs35973922	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4312282	0.89[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4932592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4932593	1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs4984325	1.00[YRI][hapmap]
rs62009549	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7165760	0.95[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs7171131	0.90[CEU][hapmap];0.86[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs7171921	0.95[ASN][1000 genomes]
rs7172099	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7172159	0.85[CHB][hapmap];0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs7178673	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7178734	0.93[ASN][1000 genomes]
rs7179815	0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs8025507	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8025658	1.00[YRI][hapmap]
rs8027160	0.95[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.84[EUR][1000 genomes]
rs8040046	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs953888	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs976216	0.93[ASN][1000 genomes]
rs9920069	0.95[CHB][hapmap];0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92498200-92555000	Weak transcription	Gastric	stomach
2	chr15:92518200-92526000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr15:92519000-92529000	Weak transcription	Brain Angular Gyrus	brain
4	chr15:92523000-92526200	Enhancers	Right Ventricle	heart
5	chr15:92523000-92526200	Enhancers	HSMMtube	muscle
6	chr15:92523200-92525400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr15:92523200-92525600	Enhancers	Lung	lung
8	chr15:92523200-92526200	Enhancers	Left Ventricle	heart
9	chr15:92523800-92527400	Enhancers	Right Atrium	heart
10	chr15:92524000-92529200	Enhancers	Fetal Heart	heart
11	chr15:92524200-92528200	Weak transcription	Brain Anterior Caudate	brain
12	chr15:92524400-92527400	Enhancers	Spleen	Spleen
13	chr15:92524400-92528400	Weak transcription	Brain Substantia Nigra	brain
14	chr15:92524400-92533600	Weak transcription	Psoas Muscle	Psoas
15	chr15:92524600-92528400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr15:92524600-92528600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr15:92524600-92533200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr15:92524600-92534000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr15:92525000-92525400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:92525000-92525600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:92525000-92526200	Enhancers	Esophagus	oesophagus
22	chr15:92525000-92526400	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr15:92525000-92526600	Enhancers	HMEC	breast
24	chr15:92525200-92525400	Enhancers	Primary T cells fromperipheralblood	blood
25	chr15:92525200-92525400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
26	chr15:92525200-92525400	Enhancers	Pancreas	Pancrea
27	chr15:92525200-92526000	Weak transcription	Aorta	Aorta
28	chr15:92525200-92526400	Weak transcription	Brain Hippocampus Middle	brain
29	chr15:92525200-92527400	Enhancers	Ovary	ovary

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