Variant report

Variant	rs12916491
Chromosome Location	chr15:92529930-92529931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10454699	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10852165	0.90[EUR][1000 genomes]
rs10852166	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11635055	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12439826	0.96[ASN][1000 genomes]
rs12901238	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12902685	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12905744	0.95[ASN][1000 genomes]
rs12909480	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12910715	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12910862	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1356417	0.90[ASN][1000 genomes]
rs1400783	0.93[ASN][1000 genomes]
rs1568210	0.96[ASN][1000 genomes]
rs2138849	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2176452	0.91[ASN][1000 genomes]
rs35973922	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4312282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4932592	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4932593	0.94[ASN][1000 genomes]
rs62009549	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7171921	0.93[ASN][1000 genomes]
rs7172099	0.93[ASN][1000 genomes]
rs7178673	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7178734	0.90[ASN][1000 genomes]
rs8025507	0.85[EUR][1000 genomes]
rs8040046	0.93[ASN][1000 genomes]
rs953888	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs976216	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92498200-92555000	Weak transcription	Gastric	stomach
2	chr15:92524400-92533600	Weak transcription	Psoas Muscle	Psoas
3	chr15:92524600-92533200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:92524600-92534000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:92526200-92533400	Weak transcription	HSMMtube	muscle
6	chr15:92526200-92544000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:92526400-92535600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:92526400-92535800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:92527400-92532200	Weak transcription	Ovary	ovary
10	chr15:92527400-92551400	Weak transcription	Aorta	Aorta
11	chr15:92527800-92533000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:92529000-92530000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:92529000-92533200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr15:92529000-92533600	Weak transcription	Brain Anterior Caudate	brain
15	chr15:92529000-92538000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:92529200-92532000	Weak transcription	Fetal Heart	heart
17	chr15:92529200-92533600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr15:92529400-92532200	Weak transcription	Brain Angular Gyrus	brain
19	chr15:92529400-92532200	Weak transcription	Brain Substantia Nigra	brain
20	chr15:92529400-92532400	Weak transcription	Lung	lung
21	chr15:92529400-92534000	Weak transcription	Right Ventricle	heart
22	chr15:92529600-92532200	Weak transcription	Left Ventricle	heart
23	chr15:92529600-92532400	Weak transcription	Brain Hippocampus Middle	brain
24	chr15:92529600-92532400	Weak transcription	Right Atrium	heart
25	chr15:92529600-92533600	Weak transcription	Esophagus	oesophagus
26	chr15:92529600-92535600	Weak transcription	Spleen	Spleen

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