Variant report

Variant	rs11077884
Chromosome Location	chr17:66994787-66994788
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11077858	0.92[CEU][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11077859	0.92[CEU][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11077860	0.92[CEU][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11453	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11657541	0.81[CEU][hapmap]
rs11871766	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11871944	0.84[CEU][hapmap]
rs12939564	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12940103	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12942599	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12943969	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1541470	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16973495	0.96[CEU][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2191212	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2191213	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2302292	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2302293	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2302294	0.92[CEU][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36096265	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4548939	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4968983	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6501947	0.84[CEU][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7207125	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7215642	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs7217543	0.80[CEU][hapmap]
rs7218871	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8068236	0.83[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8070357	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9894490	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66977600-67001400	Weak transcription	Fetal Lung	lung
2	chr17:66977800-67027400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr17:66979400-67005400	Weak transcription	Psoas Muscle	Psoas
4	chr17:66979600-67001200	Weak transcription	Left Ventricle	heart
5	chr17:66980400-67009400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr17:66981400-67001200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr17:66981400-67001400	Weak transcription	Fetal Muscle Leg	muscle
8	chr17:66988000-67001400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr17:66989600-67004200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr17:66989800-67011000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr17:66990000-67001200	Weak transcription	Liver	Liver
12	chr17:66991600-67001200	Weak transcription	Adipose Nuclei	Adipose
13	chr17:66992200-67003000	Weak transcription	Ovary	ovary
14	chr17:66993000-67001200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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